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使用单接头和环化方法降低 miRNA 测序偏倚。

Decreasing miRNA sequencing bias using a single adapter and circularization approach.

机构信息

SomaGenics, Inc., Santa Cruz, California, USA.

出版信息

Genome Biol. 2018 Sep 3;19(1):105. doi: 10.1186/s13059-018-1488-z.

DOI:10.1186/s13059-018-1488-z
PMID:30173660
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6120088/
Abstract

The ability to accurately quantify all the microRNAs (miRNAs) in a sample is important for understanding miRNA biology and for development of new biomarkers and therapeutic targets. We develop a new method for preparing miRNA sequencing libraries, RealSeq®-AC, that involves ligating the miRNAs with a single adapter and circularizing the ligation products. When compared to other methods, RealSeq®-AC provides greatly reduced miRNA sequencing bias and allows the identification of the largest variety of miRNAs in biological samples. This reduced bias also allows robust quantification of miRNAs present in samples across a wide range of RNA input levels.

摘要

准确量化样品中所有 microRNAs (miRNAs) 的能力对于理解 miRNA 生物学以及开发新的生物标志物和治疗靶点非常重要。我们开发了一种新的 miRNA 测序文库制备方法,RealSeq®-AC,该方法涉及用单个接头连接 miRNAs 并环化连接产物。与其他方法相比,RealSeq®-AC 大大降低了 miRNA 测序偏差,并允许鉴定生物样品中最多样化的 miRNAs。这种降低的偏差还允许对 RNA 输入水平广泛变化的样品中存在的 miRNAs 进行稳健的定量。

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1
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2
YM500v3: a database for small RNA sequencing in human cancer research.YM500v3:一个用于人类癌症研究中小RNA测序的数据库。
Nucleic Acids Res. 2017 Jan 4;45(D1):D925-D931. doi: 10.1093/nar/gkw1084. Epub 2016 Nov 29.
3
Toward the promise of microRNAs - Enhancing reproducibility and rigor in microRNA research.迈向微小RNA的前景——提高微小RNA研究的可重复性和严谨性。
来自 Knight 阿尔茨海默病研究中心的阿尔茨海默病和相关痴呆症的遗传和多组学资源。
Sci Data. 2024 Jul 12;11(1):768. doi: 10.1038/s41597-024-03485-9.
4
Heat stress promotes Arabidopsis AGO1 phase separation and association with stress granule components.热胁迫促进拟南芥AGO1相分离并与应激颗粒成分结合。
iScience. 2024 Feb 6;27(3):109151. doi: 10.1016/j.isci.2024.109151. eCollection 2024 Mar 15.
5
Small molecule regulators of microRNAs identified by high-throughput screen coupled with high-throughput sequencing.高通量筛选与高通量测序相结合鉴定 microRNAs 的小分子调节剂。
Nat Commun. 2023 Nov 21;14(1):7575. doi: 10.1038/s41467-023-43293-0.
6
Optimized infrared photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (IR-PAR-CLIP) protocol identifies novel IGF2BP3-interacting RNAs in colon cancer cells.优化的近红外光可激活核苷酸增强交联和免疫沉淀(IR-PAR-CLIP)技术鉴定出结肠癌细胞中新型 IGF2BP3 相互作用的 RNA。
RNA. 2023 Nov;29(11):1818-1836. doi: 10.1261/rna.079714.123. Epub 2023 Aug 15.
7
Comprehensive Transcriptomics Profiling of MicroRNA Reveals Plasma Circulating Biomarkers of Hypertrophic Cardiomyopathy and Dysregulated Signaling Pathways.全面转录组学 miRNA 分析揭示肥厚型心肌病的血浆循环生物标志物和失调的信号通路。
Circ Heart Fail. 2023 Jun;16(6):e010010. doi: 10.1161/CIRCHEARTFAILURE.122.010010. Epub 2023 Jun 12.
8
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Viruses. 2023 Feb 24;15(3):622. doi: 10.3390/v15030622.
9
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10
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Mol Plant Pathol. 2023 Jun;24(6):570-587. doi: 10.1111/mpp.13324. Epub 2023 Mar 14.
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4
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Anal Chem. 2016 Feb 16;88(4):2088-95. doi: 10.1021/acs.analchem.5b03376. Epub 2016 Jan 27.
5
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6
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Nucleic Acids Res. 2015 Jan;43(1):e2. doi: 10.1093/nar/gku1235. Epub 2014 Dec 12.
8
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Nucleic Acids Res. 2015 Jan;43(1):e1. doi: 10.1093/nar/gku637. Epub 2014 Jul 23.
9
Evaluating bias-reducing protocols for RNA sequencing library preparation.评估用于RNA测序文库制备的偏差减少方案。
BMC Genomics. 2014 Jul 7;15(1):569. doi: 10.1186/1471-2164-15-569.
10
Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study.评价定量 miRNA 表达平台在 microRNA 质量控制(miRQC)研究中的应用。
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