Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden
mBio. 2018 Sep 11;9(5):e01446-18. doi: 10.1128/mBio.01446-18.
Highly expressed genes are commonly located close to the origin of replication of bacterial chromosomes (OriC). This location skew is thought to reflect selective advantages associated with gene dosage effects during the replication cycle. The expression of constitutively expressed genes can vary up to fivefold based on chromosomal location, but it is not clear what level of variation would occur in naturally regulated operons. We tested the magnitude of the chromosome location effect using EF-Tu (, ), an abundant protein whose cellular level correlates with, and limits, the maximum growth rate. We translocated the operon to four locations across the chromosome. The distance from OriC had only a small effect on growth rate, consistent with this operon having the natural ability to upregulate expression and compensate for reduced gene dosage. In contrast, when the total EF-Tu concentration was limiting for the growth rate ( deleted), we observed a strong gene dosage effect when was located further from OriC. However, only a short period of experimental evolution was required before the bacteria adapted to this EF-Tu starvation situation by acquiring genetic changes that increased expression levels from the translocated gene, restoring growth rates. Our findings demonstrate that, at least for the operon, gene dosage is probably not the dominant force selecting for a chromosomal location close to OriC. We suggest that the colocation of highly expressed genes close to OriC might instead be selected because it enhances their coregulation during various growth states, with gene dosage being a secondary benefit. A feature of bacterial chromosomes is that highly expressed essential genes are usually located close to the origin of replication. Because bacteria have overlapping cycles of replication, genes located close to the origin will often be present in multiple copies, and this is thought to be of selective benefit where high levels of expression support high growth rate. However, the magnitude of this selective effect and whether other forces could be at play are poorly understood. To study this, we translocated a highly expressed essential operon, , to different locations and measured growth fitness. We found that transcriptional regulation buffered the effects of translocation and that even under conditions where growth rate was reduced, genetic changes that increased the expression of were easily and rapidly selected. We conclude, at least for , that forces other than gene dosage may be significant in selecting for chromosomal location.
高度表达的基因通常位于细菌染色体复制原点(OriC)附近。这种位置偏斜被认为反映了在复制周期中与基因剂量效应相关的选择优势。组成型表达基因的表达可以根据染色体位置变化高达五倍,但尚不清楚自然调控操纵子中会发生多大程度的变化。我们使用 EF-Tu( )测试了染色体位置效应的幅度,EF-Tu 是一种丰富的蛋白质,其细胞水平与最大生长速率相关,并限制了最大生长速率。我们将 操纵子转移到染色体上的四个位置。离 OriC 的距离对生长速率的影响很小,这与该操纵子具有上调表达并补偿基因剂量减少的自然能力一致。相比之下,当 EF-Tu 浓度限制生长速率( 缺失)时,当 位于离 OriC 更远的位置时,我们观察到强烈的基因剂量效应。然而,仅需进行短暂的实验进化,细菌就适应了 EF-Tu 饥饿的情况,通过获取从转移的 基因增加表达水平的遗传变化,恢复了生长速率。我们的发现表明,至少对于 操纵子而言,基因剂量可能不是选择靠近 OriC 的染色体位置的主要力量。我们认为,高度表达的基因与 OriC 紧密相关的共定位可能是因为它增强了它们在各种生长状态下的共调控,而基因剂量是次要的好处。细菌染色体的一个特征是,高度表达的必需基因通常位于复制原点附近。由于细菌的复制周期重叠,位于原点附近的基因通常会有多个副本,这被认为是具有选择性优势的,因为高水平的表达支持高生长速率。然而,这种选择效应的幅度以及是否存在其他力量尚不清楚。为了研究这一点,我们将一个高度表达的必需操纵子 转移到不同的位置,并测量了生长适应性。我们发现转录调节缓冲了易位的影响,并且即使在生长速率降低的情况下,增加 表达的遗传变化也很容易且迅速地被选择。我们得出结论,至少对于 来说,除了基因剂量之外的其他力量可能在选择染色体位置方面具有重要意义。