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机器学习在肿瘤凝集素鉴定中的应用简述。

A Brief Survey of Machine Learning Application in Cancerlectin Identification.

机构信息

Key Laboratory for Neuro-Information of Ministry of Education, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 610054, China.

Department of Pathophysiology, Southwest Medical University, Luzhou 646000, China.

出版信息

Curr Gene Ther. 2018;18(5):257-267. doi: 10.2174/1566523218666180913112751.

Abstract

Proteins with at least one carbohydrate recognition domain are lectins that can identify and reversibly interact with glycan moiety of glycoconjugates or a soluble carbohydrate. It has been proved that lectins can play various vital roles in mediating signal transduction, cell-cell recognition and interaction, immune defense, and so on. Most organisms can synthesize and secret lectins. A portion of lectins closely related to diverse cancers, called cancerlectins, are involved in tumor initiation, growth and recrudescence. Cancerlectins have been investigated for their applications in the laboratory study, clinical diagnosis and therapy, and drug delivery and targeting of cancers. The identification of cancerlectin genes from a lot of lectins is helpful for dissecting cancers. Several cancerlectin prediction tools based on machine learning approaches have been established and have become an excellent complement to experimental methods. In this review, we comprehensively summarize and expound the indispensable materials for implementing cancerlectin prediction models. We hope that this review will contribute to understanding cancerlectins and provide valuable clues for the study of cancerlectins. Novel systems for cancerlectin gene identification are expected to be developed for clinical applications and gene therapy.

摘要

具有至少一个碳水化合物识别结构域的蛋白质是凝集素,能够识别并可逆地与糖缀合物或可溶性碳水化合物的糖部分相互作用。已经证明,凝集素可以在介导信号转导、细胞-细胞识别和相互作用、免疫防御等方面发挥各种重要作用。大多数生物体可以合成和分泌凝集素。有一部分与各种癌症密切相关的凝集素,称为癌凝集素,参与肿瘤的起始、生长和复发。癌凝集素已被用于实验室研究、临床诊断和治疗、药物输送以及癌症的靶向治疗。从大量凝集素中鉴定出癌凝集素基因有助于剖析癌症。已经建立了基于机器学习方法的几种癌凝集素预测工具,成为实验方法的极好补充。在这篇综述中,我们全面总结和阐述了实施癌凝集素预测模型不可或缺的材料。我们希望这篇综述有助于理解癌凝集素,并为癌凝集素的研究提供有价值的线索。新型的癌凝集素基因鉴定系统有望应用于临床应用和基因治疗。

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