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枯草芽孢杆菌 168 中 N 端截短的 EpsC 的体外特征,一种 UDP-N-乙酰葡萄糖胺 4,6-脱水酶。

In vitro characterization of N-terminal truncated EpsC from Bacillus subtilis 168, a UDP-N-acetylglucosamine 4,6-dehydratase.

机构信息

Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai, 400076, India.

Department of Biochemistry, Indian Institute of Science, CV Raman Road, Bengaluru, 560012, India.

出版信息

Arch Biochem Biophys. 2018 Nov 1;657:78-88. doi: 10.1016/j.abb.2018.09.005. Epub 2018 Sep 14.

DOI:10.1016/j.abb.2018.09.005
PMID:30222950
Abstract

Bacillus subtilis 168 EpsC is annotated as "Probable polysaccharide biosynthesis protein" in the SwissProt database. epsC is part of the eps operon, thought to be involved in the biosynthesis of exopolymeric substances (EPS). The present study was undertaken to determine the molecular function of EpsC. Sequence analysis of EpsC suggested the presence of a transmembrane domain. Two N-terminal deletion mutants in which residues 1-89 (EpsC) and 1-115 (EpsC) are deleted were cloned and overexpressed. Enzyme activity and substrate preferences were investigated by reverse phase HPLC, surface plasmon resonance (SPR) spectroscopy and absorption spectroscopy. These data show that EpsC has UDP-GlcNAc 4,6-dehydratase activity in vitro. Purified recombinant proteins were found to utilise UDP-Glc and TDP-Glc also as substrates. In addition, EpsC could utilise UDP-Gal and UDP-GalNAc as substrates whereas EpsC could only bind these two sugar nucleotides. These results show that deletion of a longer N-terminal region broadens substrate specificity. These broadened specificity is perhaps an outcome of the deletion of the putative transmembrane domain and may not be present in vivo. EpsC, together with the aminotransferase EpsN (Kaundinya CR et al., Glycobiology, 2018) and acetyltransferase EpsM (unpublished data), appears to be involved in the biosynthesis of N,N'-diacetylbacillosamine.

摘要

枯草芽孢杆菌 168 株 EpsC 在 SwissProt 数据库中被注释为“可能的多糖生物合成蛋白”。epsC 是 eps 操纵子的一部分,被认为参与了胞外聚合物(EPS)的生物合成。本研究旨在确定 EpsC 的分子功能。EpsC 的序列分析表明存在跨膜结构域。克隆并表达了缺失 1-89 位(EpsC)和 1-115 位(EpsC)残基的两个 N 端缺失突变体。通过反相高效液相色谱、表面等离子体共振(SPR)光谱和吸收光谱研究了酶活性和底物偏好性。这些数据表明,EpsC 在体外具有 UDP-GlcNAc 4,6-脱水酶活性。纯化的重组蛋白被发现也可以利用 UDP-Glc 和 TDP-Glc 作为底物。此外,EpsC 可以利用 UDP-Gal 和 UDP-GalNAc 作为底物,而 EpsC 只能结合这两种糖核苷酸。这些结果表明,较长的 N 端区域的缺失拓宽了底物特异性。这种拓宽的特异性可能是由于假定的跨膜结构域的缺失所致,而在体内可能不存在。EpsC 与氨基转移酶 EpsN(Kaundinya CR 等人,Glycobiology,2018 年)和乙酰基转移酶 EpsM(未发表的数据)一起,似乎参与了 N,N'-二乙酰胞壁酰二胺的生物合成。

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