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通过基因组规模代谢建模揭示人类胚胎干细胞的代谢特征。

Revealing the metabolic characteristics of human embryonic stem cells by genome-scale metabolic modeling.

机构信息

School of Life Sciences, Tsinghua University, Beijing, China.

State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences-Beijing (PHOENIX Center), Beijing Institute of Lifeomics, China.

出版信息

FEBS Lett. 2018 Nov;592(22):3670-3682. doi: 10.1002/1873-3468.13255. Epub 2018 Nov 2.

DOI:10.1002/1873-3468.13255
PMID:30223296
Abstract

Embryonic stem cells (ESCs) are characterized by a dual capacity, self-renewal and pluripotency, which can be regulated by metabolism. A better understanding of ESC metabolism and regulatory mechanisms is pivotal for research into development, ageing, and cancer treatment. However, a systematic and comprehensive delineation of human ESC metabolism is still lacking. Here, we reconstructed the first genome-scale metabolic model (GEM) of human ESCs (hESCs). By GEM simulation and analyses, hESC global metabolic characteristics including essential metabolites and network motifs were identified. Potential metabolic subsystems responsible for self-renewal and pluripotency were also identified by analyses and experiments. This first GEM of hESCs provides a novel view and resource for stem cell metabolism research and will contribute to the elucidation of their metabolic characteristics.

摘要

胚胎干细胞(ESCs)的特征是具有自我更新和多能性的双重能力,这可以通过代谢来调节。更好地了解 ESC 代谢和调节机制对于研究发育、衰老和癌症治疗至关重要。然而,人类 ESC 代谢的系统和全面描述仍然缺乏。在这里,我们构建了人类胚胎干细胞(hESCs)的第一个基因组规模代谢模型(GEM)。通过 GEM 模拟和分析,确定了 hESC 的全局代谢特征,包括必需代谢物和网络基元。通过分析和实验,还确定了负责自我更新和多能性的潜在代谢子系统。hESCs 的这个第一个 GEM 为干细胞代谢研究提供了新的视角和资源,并将有助于阐明它们的代谢特征。

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Revealing the metabolic characteristics of human embryonic stem cells by genome-scale metabolic modeling.通过基因组规模代谢建模揭示人类胚胎干细胞的代谢特征。
FEBS Lett. 2018 Nov;592(22):3670-3682. doi: 10.1002/1873-3468.13255. Epub 2018 Nov 2.
2
PHB Associates with the HIRA Complex to Control an Epigenetic-Metabolic Circuit in Human ESCs.PHB 与 HIRA 复合物结合,以控制人类胚胎干细胞中的表观遗传代谢回路。
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Discovery of consensus gene signature and intermodular connectivity defining self-renewal of human embryonic stem cells.发现定义人类胚胎干细胞自我更新的共识基因特征和模块间连通性。
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Embryonic stem cell related gene regulates alternative splicing of transcription factor 3 to maintain human embryonic stem cells' self-renewal and pluripotency.胚胎干细胞相关基因调控转录因子 3 的可变剪接,以维持人类胚胎干细胞的自我更新和多能性。
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Stem Cells. 2019 Sep;37(9):1158-1165. doi: 10.1002/stem.3044. Epub 2019 Jun 10.

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The Power of LC-MS Based Multiomics: Exploring Adipogenic Differentiation of Human Mesenchymal Stem/Stromal Cells.
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The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency.启动态/原始态人类胚胎干细胞的代谢网络模型突显了氧化还原电位和色氨酸代谢在启动态多能性中的重要性。
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