• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于生物信息学分析和肝癌验证的转录因子相关调控网络分析。

Analysis of Transcription Factor-Related Regulatory Networks Based on Bioinformatics Analysis and Validation in Hepatocellular Carcinoma.

机构信息

Department of Hepatobiliary and Pancreatic Surgery, The Second Hospital of Jilin University, Changchun 130041, China.

Jilin Engineering Laboratory for Translational Medicine of Hepatobiliary and Pancreatic Diseases, The Second Hospital of Jilin University, Changchun 130041, China.

出版信息

Biomed Res Int. 2018 Aug 29;2018:1431396. doi: 10.1155/2018/1431396. eCollection 2018.

DOI:10.1155/2018/1431396
PMID:30228980
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6136478/
Abstract

Hepatocellular carcinoma (HCC) accounts for a significant proportion of liver cancer, which has become the second most common cause of cancer-related mortality worldwide. To investigate the potential mechanisms of invasion and progression of HCC, bioinformatics analysis and validation by qRT-PCR were performed. We found 237 differentially expressed genes (DEGs) including EGR1, FOS, and FOSB, which were three cancer-related transcription factors. Subsequently, we constructed TF-gene network and miRNA-TF-mRNA network based on data obtained from mRNA and miRNA expression profiles for analysis of HCC. We found that 42 key genes from the TF-gene network including EGR1, FOS, and FOSB were most enriched in the p53 signaling pathway. The qRT-PCR data confirmed that mRNA levels of EGR1, FOS, and FOSB all were decreased in HCC tissues. In addition, we confirmed that the mRNA levels of CCNB1, CCNB2, and CHEK1, three key markers of the p53 signaling pathway, were all increased in HCC tissues by bioinformatics analysis and qRT-PCR validation. Therefore, we speculated that miR-181a-5p, which was upregulated in HCC tissues, could regulate FOS and EGR1 to promote the invasion and progression of HCC by p53 signaling pathway. Overall, the study provides support for the possible mechanisms of progression in HCC.

摘要

肝细胞癌(HCC)占肝癌的很大比例,已成为全球癌症相关死亡的第二大常见原因。为了研究 HCC 侵袭和进展的潜在机制,我们进行了生物信息学分析,并通过 qRT-PCR 进行了验证。我们发现了 237 个差异表达基因(DEGs),包括 EGR1、FOS 和 FOSB,它们是三个与癌症相关的转录因子。随后,我们基于 mRNA 和 miRNA 表达谱的数据构建了 TF-基因网络和 miRNA-TF-mRNA 网络,以分析 HCC。我们发现 TF-基因网络中的 42 个关键基因,包括 EGR1、FOS 和 FOSB,在 p53 信号通路中最为丰富。qRT-PCR 数据证实,HCC 组织中 EGR1、FOS 和 FOSB 的 mRNA 水平均降低。此外,我们通过生物信息学分析和 qRT-PCR 验证证实,p53 信号通路的三个关键标志物 CCNB1、CCNB2 和 CHEK1 的 mRNA 水平在 HCC 组织中均升高。因此,我们推测 HCC 组织中上调的 miR-181a-5p 可能通过 p53 信号通路调节 FOS 和 EGR1,从而促进 HCC 的侵袭和进展。总体而言,该研究为 HCC 进展的可能机制提供了支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/be4f9b1bf6ad/BMRI2018-1431396.008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/0f08e444163d/BMRI2018-1431396.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/379efc0ca7de/BMRI2018-1431396.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/397f2863e9c1/BMRI2018-1431396.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/7da4eb6bb866/BMRI2018-1431396.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/0f10ea71a05d/BMRI2018-1431396.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/aa1ecefbacb7/BMRI2018-1431396.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/a3e0ffbc28f3/BMRI2018-1431396.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/be4f9b1bf6ad/BMRI2018-1431396.008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/0f08e444163d/BMRI2018-1431396.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/379efc0ca7de/BMRI2018-1431396.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/397f2863e9c1/BMRI2018-1431396.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/7da4eb6bb866/BMRI2018-1431396.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/0f10ea71a05d/BMRI2018-1431396.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/aa1ecefbacb7/BMRI2018-1431396.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/a3e0ffbc28f3/BMRI2018-1431396.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/584b/6136478/be4f9b1bf6ad/BMRI2018-1431396.008.jpg

相似文献

1
Analysis of Transcription Factor-Related Regulatory Networks Based on Bioinformatics Analysis and Validation in Hepatocellular Carcinoma.基于生物信息学分析和肝癌验证的转录因子相关调控网络分析。
Biomed Res Int. 2018 Aug 29;2018:1431396. doi: 10.1155/2018/1431396. eCollection 2018.
2
CircCCNB1 silencing acting as a miR-106b-5p sponge inhibited GPM6A expression to promote HCC progression by enhancing DYNC1I1 expression and activating the AKT/ERK signaling pathway.环状 CCNA1 沉默作为 miR-106b-5p 的海绵吸附物抑制 GPM6A 表达,通过增强 DYNC1I1 表达和激活 AKT/ERK 信号通路促进 HCC 进展。
Int J Biol Sci. 2022 Jan 1;18(2):637-651. doi: 10.7150/ijbs.66915. eCollection 2022.
3
Integrated Bioinformatics Analysis for the Screening of Hub Genes and Therapeutic Drugs in Hepatocellular Carcinoma.基于生物信息学的肝细胞癌关键基因及药物筛选的综合分析
Curr Pharm Biotechnol. 2023;24(8):1035-1058. doi: 10.2174/1389201023666220628113452.
4
Bioinformatics Analyses of Potential miRNA-mRNA Regulatory Axis in HBV-related Hepatocellular Carcinoma.基于生物信息学分析乙型肝炎病毒相关性肝细胞癌中潜在的 miRNA-mRNA 调控轴。
Int J Med Sci. 2021 Jan 1;18(2):335-346. doi: 10.7150/ijms.50126. eCollection 2021.
5
Identification of invasion-metastasis-associated microRNAs in hepatocellular carcinoma based on bioinformatic analysis and experimental validation.基于生物信息学分析和实验验证鉴定肝癌中与侵袭转移相关的 microRNAs。
J Transl Med. 2018 Sep 29;16(1):266. doi: 10.1186/s12967-018-1639-8.
6
Identification and validation of three core genes in p53 signaling pathway in hepatitis B virus-related hepatocellular carcinoma.乙型肝炎病毒相关肝细胞癌中p53信号通路三个核心基因的鉴定与验证
World J Surg Oncol. 2021 Mar 8;19(1):66. doi: 10.1186/s12957-021-02174-w.
7
Bioinformatics identification of crucial genes and pathways associated with hepatocellular carcinoma.生物信息学鉴定与肝细胞癌相关的关键基因和通路。
Biosci Rep. 2018 Nov 9;38(6). doi: 10.1042/BSR20181441. Print 2018 Dec 21.
8
CDK1, CCNB1, CDC20, BUB1, MAD2L1, MCM3, BUB1B, MCM2, and RFC4 May Be Potential Therapeutic Targets for Hepatocellular Carcinoma Using Integrated Bioinformatic Analysis.CDK1、CCNB1、CDC20、BUB1、MAD2L1、MCM3、BUB1B、MCM2 和 RFC4 可能是使用综合生物信息学分析治疗肝细胞癌的潜在治疗靶点。
Biomed Res Int. 2019 Oct 13;2019:1245072. doi: 10.1155/2019/1245072. eCollection 2019.
9
[Screening core genes and cyclin B2 as a potential diagnosis, treatment and prognostic biomarker of hepatocellular carcinoma based on bioinformatics analysis].基于生物信息学分析筛选核心基因及细胞周期蛋白B2作为肝细胞癌潜在的诊断、治疗及预后生物标志物
Zhonghua Gan Zang Bing Za Zhi. 2020 Sep 20;28(9):773-783. doi: 10.3760/cma.j.cn501113-20200818-00461.
10
Identification of potential transcription factors, long noncoding RNAs, and microRNAs associated with hepatocellular carcinoma.与肝细胞癌相关的潜在转录因子、长链非编码RNA和微小RNA的鉴定。
J Cancer Res Ther. 2018 Sep;14(Supplement):S622-S627. doi: 10.4103/0973-1482.204846.

引用本文的文献

1
OncomiR-181a promotes carcinogenesis by repressing the extracellular matrix proteoglycan decorin in hepatocellular carcinoma.OncomiR-181a 通过抑制肝癌细胞外基质蛋白聚糖核心蛋白聚糖促进癌发生。
BMC Gastroenterol. 2024 Sep 30;24(1):337. doi: 10.1186/s12876-024-03413-6.
2
Lentinan induces apoptosis of mouse hepatocellular carcinoma cells through the EGR1/PTEN/AKT signaling axis.香菇多糖通过 EGR1/PTEN/AKT 信号通路诱导小鼠肝癌细胞凋亡。
Oncol Rep. 2023 Jul;50(1). doi: 10.3892/or.2023.8579. Epub 2023 Jun 2.
3
Prediction of liver cancer prognosis based on immune cell marker genes.

本文引用的文献

1
Mechanistic insights into avian reovirus p17-modulated suppression of cell cycle CDK-cyclin complexes and enhancement of p53 and cyclin H interaction.鸡传染性法氏囊病病毒 p17 调节抑制细胞周期 CDK-cyclin 复合物并增强 p53 和 cyclin H 相互作用的机制研究。
J Biol Chem. 2018 Aug 10;293(32):12542-12562. doi: 10.1074/jbc.RA118.002341. Epub 2018 Jun 15.
2
Downregulation of miR-374b-5p promotes chemotherapeutic resistance in pancreatic cancer by upregulating multiple anti-apoptotic proteins.miR-374b-5p的下调通过上调多种抗凋亡蛋白促进胰腺癌的化疗耐药性。
Int J Oncol. 2018 May;52(5):1491-1503. doi: 10.3892/ijo.2018.4315. Epub 2018 Mar 14.
3
基于免疫细胞标志物基因预测肝癌预后。
Front Immunol. 2023 Apr 27;14:1147797. doi: 10.3389/fimmu.2023.1147797. eCollection 2023.
4
Bioinformatics Analysis Identifies as the Key Transcription Factor in Hepatocellular Carcinoma Progression.生物信息学分析鉴定 为肝癌进展中的关键转录因子。
Dis Markers. 2023 Jan 30;2023:3560340. doi: 10.1155/2023/3560340. eCollection 2023.
5
Identification of Differentially Expressed Genes Associated with the Prognosis and Diagnosis of Hepatocellular Carcinoma by Integrated Bioinformatics Analysis.基于整合生物信息学分析鉴定与肝细胞癌预后和诊断相关的差异表达基因。
Biomed Res Int. 2022 Oct 22;2022:4237633. doi: 10.1155/2022/4237633. eCollection 2022.
6
Identification of key genes and carcinogenic pathways in hepatitis B virus-associated hepatocellular carcinoma through bioinformatics analysis.通过生物信息学分析鉴定乙型肝炎病毒相关肝细胞癌中的关键基因和致癌途径。
Ann Hepatobiliary Pancreat Surg. 2022 Feb 28;26(1):58-68. doi: 10.14701/ahbps.21-108.
7
The Expression and Function of Circadian Rhythm Genes in Hepatocellular Carcinoma.昼夜节律基因在肝细胞癌中的表达与功能。
Oxid Med Cell Longev. 2021 Oct 16;2021:4044606. doi: 10.1155/2021/4044606. eCollection 2021.
8
Dexmedetomidine Ameliorates Postoperative Cognitive Dysfunction via the MicroRNA-381-Mediated EGR1/p53 Axis.右美托咪定通过 microRNA-381 介导的 EGR1/p53 轴减轻术后认知功能障碍。
Mol Neurobiol. 2021 Oct;58(10):5052-5066. doi: 10.1007/s12035-021-02417-7. Epub 2021 Jul 10.
9
A prognostic model for hepatocellular carcinoma based on apoptosis-related genes.一种基于凋亡相关基因的肝细胞癌预后模型。
World J Surg Oncol. 2021 Mar 12;19(1):70. doi: 10.1186/s12957-021-02175-9.
10
Transcriptional and epigenetic landscape of Ca-signaling genes in hepatocellular carcinoma.肝细胞癌中钙信号基因的转录和表观遗传图谱
J Cell Commun Signal. 2021 Sep;15(3):433-445. doi: 10.1007/s12079-020-00597-w. Epub 2021 Jan 4.
p53 as a Dichotomous Regulator of Liver Disease: The Dose Makes the Medicine.
p53 作为肝脏疾病的双重调节因子:剂量决定疗效。
Int J Mol Sci. 2018 Mar 20;19(3):921. doi: 10.3390/ijms19030921.
4
Significant expression of CHK1 and p53 in bladder urothelial carcinoma as potential therapeutic targets and prognosis.CHK1和p53在膀胱尿路上皮癌中的显著表达作为潜在治疗靶点及预后因素
Oncol Lett. 2018 Jan;15(1):568-574. doi: 10.3892/ol.2017.7344. Epub 2017 Nov 3.
5
miR-3928v is induced by HBx via NF-κB/EGR1 and contributes to hepatocellular carcinoma malignancy by down-regulating VDAC3.miR-3928v 由 HBx 通过 NF-κB/EGR1 诱导产生,通过下调 VDAC3 促进肝癌恶性进展。
J Exp Clin Cancer Res. 2018 Jan 29;37(1):14. doi: 10.1186/s13046-018-0681-y.
6
miR-139-5p inhibits aerobic glycolysis, cell proliferation, migration, and invasion in hepatocellular carcinoma via a reciprocal regulatory interaction with ETS1.miR-139-5p 通过与 ETS1 的相互调节作用抑制肝癌细胞的有氧糖酵解、增殖、迁移和侵袭。
Oncogene. 2018 Mar;37(12):1624-1636. doi: 10.1038/s41388-017-0057-3. Epub 2018 Jan 16.
7
MiR-181 family-specific behavior in different cancers: a meta-analysis view.miR-181 家族在不同癌症中的特异性行为:荟萃分析观点。
Cancer Metastasis Rev. 2018 Mar;37(1):17-32. doi: 10.1007/s10555-017-9714-9.
8
LinkedOmics: analyzing multi-omics data within and across 32 cancer types.LinkedOmics:在 32 种癌症类型内和类型间分析多组学数据。
Nucleic Acids Res. 2018 Jan 4;46(D1):D956-D963. doi: 10.1093/nar/gkx1090.
9
miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions.miRTarBase 更新 2018:一个经过实验验证的 microRNA-靶标相互作用的资源库。
Nucleic Acids Res. 2018 Jan 4;46(D1):D296-D302. doi: 10.1093/nar/gkx1067.
10
Tumor-adjacent tissue co-expression profile analysis reveals pro-oncogenic ribosomal gene signature for prognosis of resectable hepatocellular carcinoma.肿瘤旁组织共表达谱分析揭示了可切除肝细胞癌预后的致癌核糖体基因特征。
Mol Oncol. 2018 Jan;12(1):89-113. doi: 10.1002/1878-0261.12153. Epub 2017 Dec 12.