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日本梨的基因组序列草图

Draft genome sequence of Japanese pear ().

作者信息

Takemura Yoshihiro, Tamura Fumio

机构信息

Faculty of Agriculture, Tottori University, Koyama, Tottori 680-8553, Japan.

出版信息

Data Brief. 2018 Jul 10;19:2221-2223. doi: 10.1016/j.dib.2018.07.007. eCollection 2018 Aug.

Abstract

The Japanese pear (), a member of the family Rosaceae, is one of the most important fruit trees in Japan. This article documents the public availability of the partial draft genome sequence data of the Japanese pear strain TH3, which is the S1 of 'Osa-Nijisseiki' and is homozygous for the S gene. This dataset may be used to prepare molecular markers for breeding of new cultivars having a crisp texture and feel. This data will also help research on physiological disorders affecting Japanese pear fruit. We sequenced paired-end libraries using Illumina HiSeq. 2500 and generated approximately 212M reads. Data on the draft genome obtained in this study has been deposited to the DNA Data Bank of Japan (DDBJ). The read data were submitted to the DDBJ Read Archive (BioProject: PRJDB6878, BioSample: SAMD00117051).

摘要

日本梨()属于蔷薇科,是日本最重要的果树之一。本文记录了日本梨品种TH3的部分基因组序列数据的公开情况,TH3是‘奥萨二十世纪’的S1品种,且S基因纯合。该数据集可用于培育具有脆嫩质地和口感的新品种的分子标记。这些数据也将有助于研究影响日本梨果实的生理病害。我们使用Illumina HiSeq. 2500对双末端文库进行测序,生成了约2.12亿条读数。本研究中获得的基因组草图数据已存入日本DNA数据库(DDBJ)。读数数据已提交至DDBJ读数存档库(生物项目:PRJDB6878,生物样本:SAMD00117051)。

相似文献

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Draft genome sequence of Japanese pear ().日本梨的基因组序列草图
Data Brief. 2018 Jul 10;19:2221-2223. doi: 10.1016/j.dib.2018.07.007. eCollection 2018 Aug.
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Advances in Japanese pear breeding in Japan.日本梨育种在日本的进展。
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本文引用的文献

2
The genome of the pear (Pyrus bretschneideri Rehd.).梨(白梨)基因组。
Genome Res. 2013 Feb;23(2):396-408. doi: 10.1101/gr.144311.112. Epub 2012 Nov 13.

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