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在嗜仙人掌果蝇的近期分化和局部生态适应中,化学感觉基因位点的正选择与相关。

Positive selection at sites of chemosensory genes is associated with the recent divergence and local ecological adaptation in cactophilic Drosophila.

机构信息

Department of Entomology, University of Arizona, Tucson, AZ, 85721, USA.

Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721, USA.

出版信息

BMC Evol Biol. 2018 Sep 20;18(1):144. doi: 10.1186/s12862-018-1250-x.

Abstract

BACKGROUND

Adaptation to new hosts in phytophagous insects often involves mechanisms of host recognition by genes of sensory pathways. Most often the molecular evolution of sensory genes has been explained in the context of the birth-and-death model. The role of positive selection is less understood, especially associated with host adaptation and specialization. Here we aim to contribute evidence for this latter hypothesis by considering the case of Drosophila mojavensis, a species with an evolutionary history shaped by multiple host shifts in a relatively short time scale, and its generalist sister species, D. arizonae.

RESULTS

We used a phylogenetic and population genetic analysis framework to test for positive selection in a subset of four chemoreceptor genes, one gustatory receptor (Gr) and three odorant receptors (Or), for which their expression has been previously associated with host shifts. We found strong evidence of positive selection at several amino acid sites in all genes investigated, most of which exhibited changes predicted to cause functional effects in these transmembrane proteins. A significant portion of the sites identified as evolving positively were largely found in the cytoplasmic region, although a few were also present in the extracellular domains.

CONCLUSIONS

The pattern of substitution observed suggests that some of these changes likely had an effect on signal transduction as well as odorant recognition and protein-protein interactions. These findings support the role of positive selection in shaping the pattern of variation at chemosensory receptors, both during the specialization onto one or a few related hosts, but as well as during the evolution and adaptation of generalist species into utilizing several hosts.

摘要

背景

植食性昆虫对新宿主的适应通常涉及通过感觉途径的基因来识别宿主的机制。 大多数情况下,感觉基因的分子进化是在诞生和死亡模型的背景下解释的。 正选择的作用还不太了解,尤其是与宿主适应和特化有关。 在这里,我们旨在通过考虑具有多种短时间内宿主转移进化历史的果蝇 Mojavensis 及其广义姐妹种 D. arizonae 的情况,为后一种假说提供证据。

结果

我们使用系统发育和群体遗传分析框架来检验四个化学感受器基因中的一个味觉受体(Gr)和三个气味受体(Or)中的一组基因中的正选择,这些基因的表达先前与宿主转移有关。 我们在所有研究的基因中都发现了几个氨基酸位点的强烈正选择证据,其中大多数变化预计会导致这些跨膜蛋白的功能变化。 鉴定为正选择进化的许多位点主要存在于细胞质区域,尽管少数也存在于细胞外结构域。

结论

观察到的取代模式表明,其中一些变化可能对信号转导以及气味识别和蛋白质-蛋白质相互作用产生影响。 这些发现支持正选择在塑造化学感觉受体变异模式中的作用,包括在专门针对一个或几个相关宿主的过程中,以及在利用多个宿主的广义物种的进化和适应过程中。

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