Department of Orthopedics, Changzheng Hospital, Second Military Medical University, No.415 Fengyang Road, Shanghai, People's Republic of China.
Department of Medical Genetics, Second Military Medical University, Shanghai, People's Republic of China.
Mol Med. 2018 Sep 18;24(1):48. doi: 10.1186/s10020-018-0049-y.
Adolescent idiopathic scoliosis (AIS) is the most common paediatric spinal deformity. The etiology and pathology of AIS remain unexplained, and have been reported to involve a combination of genetic and epigenetic factors. Since paravertebral muscle imbalance plays an important role in the onset and progression of scoliosis, we aimed to investigate transcriptomic differences by RNA-seq and identify significantly differentially expressed transcripts in two sides of paravertebral muscle in AIS.
RNA-seq was performed on 5 pairs of paravertebral muscle from 5 AIS patients. Significantly differentially expressed transcripts were validated by quantitative reverse polymerase chain reaction. Gene expression difference was correlated to clinical characteristics.
We demonstrated that ADIPOQ mRNA and H19 is significantly differentially expressed between two sides of paravertebral muscle, relatively specific in the context of AIS. Relatively low H19 and high ADIPOQ mRNA expression levels in concave-sided muscle are associated with larger spinal curve and earlier age at initiation. We identified miR-675-5p encoded by H19 as a mechanistic regulator of ADIPOQ expression in AIS. We demonstrated that significantly reduced CCCTC-binding factor (CCTF) occupancy in the imprinting control region (ICR) of the H19 gene in the concave-sided muscle contributes to down-regulated H19 expression.
RNA-seq revealed transcriptomic differences between two sides of paravertebral muscle in AIS patients. Our findings imply that transcriptomic differences caused by epigenetic factors in affected individuals may account for the structural and functional imbalance of paravertebral muscle, which can expand our etiologic understanding of this disease.
青少年特发性脊柱侧凸(AIS)是最常见的儿科脊柱畸形。AIS 的病因和发病机制仍不清楚,据报道涉及遗传和表观遗传因素的综合作用。由于椎旁肌失衡在脊柱侧凸的发生和进展中起着重要作用,我们旨在通过 RNA-seq 研究转录组差异,并确定 AIS 椎旁肌两侧差异表达的转录本。
对 5 例 AIS 患者的 5 对椎旁肌进行 RNA-seq。通过定量逆转录聚合酶链反应验证显著差异表达的转录本。基因表达差异与临床特征相关。
我们证明 ADIPOQ mRNA 和 H19 在 AIS 椎旁肌两侧的表达存在显著差异,在 AIS 中相对特异。凹侧肌肉中 H19 相对低表达和 ADIPOQ mRNA 表达水平较高与脊柱曲线较大和起始年龄较早相关。我们发现 H19 编码的 miR-675-5p 是 AIS 中 ADIPOQ 表达的机制调节因子。我们证明,凹侧肌肉中 H19 基因印记控制区(ICR)的 CCCTC 结合因子(CCTF)占有率显著降低导致 H19 表达下调。
RNA-seq 揭示了 AIS 患者椎旁肌两侧的转录组差异。我们的发现表明,受影响个体中表观遗传因素引起的转录组差异可能导致椎旁肌的结构和功能失衡,从而扩展我们对这种疾病病因的理解。