Department of Animal Science, The University of Tennessee, Knoxville, Tennessee, USA.
Department of Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, Iowa, USA.
Appl Environ Microbiol. 2018 Nov 15;84(23). doi: 10.1128/AEM.02004-18. Print 2018 Dec 1.
Conjugation is an important mechanism for horizontal gene transfer in , the leading cause of human bacterial gastroenteritis in developed countries. However, to date, the factors that significantly influence conjugation efficiency in spp. are still largely unknown. Given that multiple recombinant loci could independently occur within one recipient cell during natural transformation, the genetic materials from a high-frequency conjugation (HFC) strain may be cotransformed with a selection marker into a low-frequency conjugation (LFC) recipient strain, creating new HFC transformants suitable for the identification of conjugation factors using a comparative genomics approach. To test this, an erythromycin resistance selection marker was created in an HFC strain; subsequently, the DNA of this strain was naturally transformed into NCTC 11168, an LFC strain, leading to the isolation of NCTC 11168-derived HFC transformants. Whole-genome sequencing analysis and subsequent site-directed mutagenesis identified Cj1051c, a putative restriction-modification enzyme ( CjeI) that could drastically reduce the conjugation efficiency of NCTC 11168 (>5,000-fold). Chromosomal complementation of three diverse HFC strains with CjeI also led to a dramatic reduction in conjugation efficiency (∼1,000-fold). The purified recombinant CjeI could effectively digest the -derived shuttle vector pRY107. The endonuclease activity of CjeI was abolished upon short heat shock treatment at 50°C, which is consistent with our previous observation that heat shock enhanced conjugation efficiency in Together, in this study, we successfully developed and utilized a unique cotransformation strategy to identify a restriction-modification enzyme that significantly influences conjugation efficiency in Conjugation is an important horizontal gene transfer mechanism contributing to the evolution of bacterial pathogenesis and antimicrobial resistance. , the leading foodborne bacterial organism, displays significant strain diversity due to horizontal gene transfer; however, the molecular components influencing conjugation efficiency in are still largely unknown. In this study, we developed a cotransformation strategy for comparative genomics analysis and successfully identified a restriction-modification enzyme that significantly influences conjugation efficiency in The new cotransformation strategy developed in this study is also expected to be broadly applied in other naturally competent bacteria for functional comparative genomics research.
conjugation 是水平基因转移的重要机制,也是导致发达国家人类细菌性胃肠炎的主要原因。然而,迄今为止,影响 spp. 接合效率的因素在很大程度上仍然未知。鉴于在自然转化过程中,一个受体细胞内可能会独立地发生多个重组基因座,因此来自高频接合(HFC)菌株的遗传物质可能会与选择标记一起被共转化到低频接合(LFC)受体菌株中,从而创造出适合使用比较基因组学方法鉴定接合因子的新 HFC 转化体。为了验证这一点,在 HFC 菌株中创建了红霉素抗性选择标记;随后,该菌株的 DNA 自然转化为 NCTC 11168,即 LFC 菌株,导致从 NCTC 11168 中分离出 HFC 转化体。全基因组测序分析和随后的定点突变鉴定出 Cj1051c,这是一种假定的限制修饰酶(CjeI),它可以极大地降低 NCTC 11168 的接合效率(>5000 倍)。用 CjeI 对三个不同的 HFC 菌株进行染色体互补也导致接合效率急剧下降(~1000 倍)。纯化的重组 CjeI 可以有效地消化来源于质粒 pRY107 的穿梭载体。在 50°C 进行短时间热休克处理后,CjeI 的内切酶活性被消除,这与我们之前的观察结果一致,即热休克增强了 在这项研究中,我们成功地开发并利用了一种独特的共转化策略来鉴定一种限制修饰酶,它显著影响 在这项研究中,我们成功地开发并利用了一种独特的共转化策略来鉴定一种限制修饰酶,它显著影响 接合是导致细菌发病机制和抗微生物耐药性进化的重要水平基因转移机制。作为主要的食源性病原体, 由于水平基因转移,其菌株多样性显著;然而,影响 的接合效率的分子成分在很大程度上仍然未知。在这项研究中,我们开发了一种共转化策略用于比较基因组学分析,并成功鉴定了一种限制修饰酶,它显著影响 新开发的共转化策略也有望在其他自然感受态细菌中广泛应用于功能比较基因组学研究。