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在自然转化中依赖于甲基化的 DNA 区分。

Methylation-dependent DNA discrimination in natural transformation of .

机构信息

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI; 48109.

Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI; 48824.

出版信息

Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):E8053-E8061. doi: 10.1073/pnas.1703331114. Epub 2017 Aug 30.

Abstract

, a leading cause of bacterial gastroenteritis, is naturally competent. Like many competent organisms, restricts the DNA that can be used for transformation to minimize undesirable changes in the chromosome. Although can be transformed by -derived DNA, it is poorly transformed by the same DNA propagated in or produced with PCR. Our work indicates that methylation plays an important role in marking DNA for transformation. We have identified a highly conserved DNA methyltransferase, which we term transformation system methyltransferase (), which methylates an overrepresented 6-bp sequence in the chromosome. DNA derived from a mutant transforms significantly less well than DNA derived from (parental) cells. The mutation itself does not affect transformation efficiency when parental DNA is used, suggesting that CtsM is important for marking transforming DNA, but not for transformation itself. The mutant has no growth defect, arguing against ongoing restriction of its own DNA. We further show that plasmid and PCR-derived DNA can efficiently transform when only a subset of the CtsM sites are methylated in vitro. A single methylation event 1 kb upstream of the DNA involved in homologous recombination is sufficient to transform , whereas otherwise identical unmethylated DNA is not. Methylation influences DNA uptake, with a slight effect also seen on DNA binding. This mechanism of DNA discrimination in is distinct from the DNA discrimination described in other competent bacteria.

摘要

能够自然转化,是导致细菌性肠胃炎的主要原因之一。与许多有转化能力的生物体一样,限制了可用于转化的 DNA,以最大程度地减少染色体的非期望变化。尽管可以被 - 衍生的 DNA 转化,但它很难被在 中传播或通过 PCR 产生的相同 DNA 转化。我们的工作表明,甲基化在标记用于转化的 DNA 方面起着重要作用。我们已经鉴定出一种高度保守的 DNA 甲基转移酶,我们将其称为 转化系统甲基转移酶 (), 它甲基化染色体中高度重复的 6 个碱基对序列。来自 突变体的 DNA 转化效率明显低于来自 (亲本)细胞的 DNA(图 1B)。当使用亲本 DNA 时, 突变本身不会影响转化效率,这表明 CtsM 对于标记转化 DNA 很重要,但对于转化本身不重要。突变体没有生长缺陷,这排除了其自身 DNA 持续受限的可能性。我们进一步表明,当仅在体外甲基化 CtsM 位点的一部分时, 质粒和 PCR 衍生的 DNA 可以有效地转化 。而其他相同的未甲基化 DNA 则不行。甲基化会影响 DNA 摄取,对 DNA 结合也有轻微影响。这种在 中区分 DNA 的机制与其他有转化能力的细菌中描述的 DNA 区分机制不同。

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