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利用 RAD 测序在综合分类学框架下划分海洋腹足纲(宝贝科、宝贝总科)的物种。

Delimiting species of marine gastropods (Turridae, Conoidea) using RAD sequencing in an integrative taxonomy framework.

机构信息

Institut de Systématique Evolution Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Paris, France.

Service de Systématique Moléculaire SSM- UMS2700 - Muséum National d'Histoire Naturelle, Paris, France.

出版信息

Mol Ecol. 2018 Nov;27(22):4591-4611. doi: 10.1111/mec.14882. Epub 2018 Nov 3.

Abstract

Species delimitation in poorly known and diverse taxa is usually performed based on monolocus, DNA-barcoding-like approaches, while multilocus data are often used to test alternative species hypotheses in well-studied groups. We combined both approaches to delimit species in the Xenuroturris/Iotyrris complex, a group of venomous marine gastropods from the Indo-Pacific. First, COI sequences were analysed using three methods of species delimitation to propose primary species hypotheses. Second, RAD sequencing data were also obtained and a maximum-likelihood phylogenetic tree produced. We tested the impact of the level of missing data on the robustness of the phylogenetic tree obtained with the RAD-seq data. Alternative species partitions revealed with the COI data set were also tested using the RAD-seq data and the Bayes factor species delimitation method. The congruence between the species hypotheses proposed with the mitochondrial nuclear data sets, together with the morphological variability of the shell and the radula and the distribution pattern, was used to turn the primary species hypotheses into secondary species hypotheses. Allopatric primary species hypotheses defined with the COI gene were interpreted to correspond to intraspecific structure. Most of the species are found sympatrically in the Philippines, and only one is confidently identified as a new species and described as Iotyrris conotaxis n. sp. The results obtained demonstrate the efficiency of the combined monolocus/multilocus approach to delimit species.

摘要

在鲜为人知且多样化的分类群中进行物种划分通常基于单基因座、类似于 DNA 条形码的方法,而多基因座数据通常用于在研究充分的群体中测试替代物种假设。我们将这两种方法结合起来,对来自印度-太平洋的有毒海洋腹足纲 Xenuroturris/Iotyrris 复合体进行物种划分。首先,使用三种物种划分方法分析 COI 序列,提出初步物种假设。其次,还获得了 RAD 测序数据并生成了最大似然系统发育树。我们测试了缺失数据水平对使用 RAD-seq 数据获得的系统发育树稳健性的影响。还使用 RAD-seq 数据和贝叶斯因子物种划分方法测试了 COI 数据集揭示的替代物种分区。线粒体核数据集提出的物种假设之间的一致性,以及壳和齿舌的形态变异性和分布模式,被用来将初步物种假设转化为次要物种假设。用 COI 基因定义的异域性初步物种假设被解释为对应于种内结构。大多数物种在菲律宾同域发现,只有一种被确认为新物种,并被描述为 Iotyrris conotaxis n. sp.。所得结果证明了组合单基因座/多基因座方法划分物种的效率。

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