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基于处方组学数据挖掘识别的精神科队列中与医院再入院率相关的药物性风险因素。

Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining.

机构信息

Institute for Next Generation Healthcare, Mount Sinai Health System, New York, NY, USA.

Department of Genetics and Genomic Sciences, Icahn Institute for Genomics and Multiscale Biology, New York, NY, USA.

出版信息

BMC Med Inform Decis Mak. 2018 Sep 14;18(Suppl 3):79. doi: 10.1186/s12911-018-0653-3.

DOI:10.1186/s12911-018-0653-3
PMID:30255805
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6156906/
Abstract

BACKGROUND

Worldwide, over 14% of individuals hospitalized for psychiatric reasons have readmissions to hospitals within 30 days after discharge. Predicting patients at risk and leveraging accelerated interventions can reduce the rates of early readmission, a negative clinical outcome (i.e., a treatment failure) that affects the quality of life of patient. To implement individualized interventions, it is necessary to predict those individuals at highest risk for 30-day readmission. In this study, our aim was to conduct a data-driven investigation to find the pharmacological factors influencing 30-day all-cause, intra- and interdepartmental readmissions after an index psychiatric admission, using the compendium of prescription data (prescriptome) from electronic medical records (EMR).

METHODS

The data scientists in the project received a deidentified database from the Mount Sinai Data Warehouse, which was used to perform all analyses. Data was stored in a secured MySQL database, normalized and indexed using a unique hexadecimal identifier associated with the data for psychiatric illness visits. We used Bayesian logistic regression models to evaluate the association of prescription data with 30-day readmission risk. We constructed individual models and compiled results after adjusting for covariates, including drug exposure, age, and gender. We also performed digital comorbidity survey using EMR data combined with the estimation of shared genetic architecture using genomic annotations to disease phenotypes.

RESULTS

Using an automated, data-driven approach, we identified prescription medications, side effects (primary side effects), and drug-drug interaction-induced side effects (secondary side effects) associated with readmission risk in a cohort of 1275 patients using prescriptome analytics. In our study, we identified 28 drugs associated with risk for readmission among psychiatric patients. Based on prescription data, Pravastatin had the highest risk of readmission (OR = 13.10; 95% CI (2.82, 60.8)). We also identified enrichment of primary side effects (n = 4006) and secondary side effects (n = 36) induced by prescription drugs in the subset of readmitted patients (n = 89) compared to the non-readmitted subgroup (n = 1186). Digital comorbidity analyses and shared genetic analyses further reveals that cardiovascular disease and psychiatric conditions are comorbid and share functional gene modules (cardiomyopathy and anxiety disorder: shared genes (n = 37; P = 1.06815E-06)).

CONCLUSIONS

Large scale prescriptome data is now available from EMRs and accessible for analytics that could improve healthcare outcomes. Such analyses could also drive hypothesis and data-driven research. In this study, we explored the utility of prescriptome data to identify factors driving readmission in a psychiatric cohort. Converging digital health data from EMRs and systems biology investigations reveal a subset of patient populations that have significant comorbidities with cardiovascular diseases are more likely to be readmitted. Further, the genetic architecture of psychiatric illness also suggests overlap with cardiovascular diseases. In summary, assessment of medications, side effects, and drug-drug interactions in a clinical setting as well as genomic information using a data mining approach could help to find factors that could help to lower readmission rates in patients with mental illness.

摘要

背景

全球范围内,超过 14%因精神原因住院的患者在出院后 30 天内再次住院。预测有风险的患者并利用加速干预措施可以降低早期再入院率,这是一种负面的临床结果(即治疗失败),会影响患者的生活质量。为了实施个性化干预措施,有必要预测那些 30 天内再入院风险最高的个体。在这项研究中,我们的目的是通过使用电子病历(EMR)中的处方数据(处方组)进行数据驱动的研究,找出影响精神科住院后 30 天全因、内部和部门间再入院的药物因素。

方法

该项目的数据科学家从西奈山数据仓库收到了一个匿名数据库,用于执行所有分析。数据存储在一个安全的 MySQL 数据库中,使用与精神病就诊数据相关的唯一十六进制标识符进行规范化和索引。我们使用贝叶斯逻辑回归模型来评估处方数据与 30 天再入院风险的关联。我们构建了个体模型,并在调整了药物暴露、年龄和性别等协变量后,编译了结果。我们还使用 EMR 数据进行了数字合并,并使用基因组注释对疾病表型进行了共享遗传结构的估计,进行了合并的遗传分析。

结果

使用自动化的数据驱动方法,我们使用 prescriptome 分析在 1275 名患者的队列中确定了与再入院风险相关的处方药物、副作用(主要副作用)和药物-药物相互作用引起的副作用(次要副作用)。在我们的研究中,我们确定了 28 种与精神科患者再入院风险相关的药物。基于处方数据,普伐他汀的再入院风险最高(OR=13.10;95%CI(2.82,60.8))。我们还发现,与非再入院亚组(n=1186)相比,再入院亚组(n=89)中与处方药物相关的主要副作用(n=4006)和次要副作用(n=36)的丰度更高。数字合并分析和共享遗传分析进一步表明,心血管疾病和精神疾病是合并的,并且共享功能基因模块(心肌病和焦虑症:共享基因(n=37;P=1.06815E-06))。

结论

现在可以从 EMR 获得大规模的处方组数据,并可用于分析,从而改善医疗保健结果。这种分析还可以推动假设和数据驱动的研究。在这项研究中,我们探讨了使用处方组数据来识别精神科队列中导致再入院的因素的效用。来自 EMR 和系统生物学研究的汇聚数字健康数据揭示了具有显著心血管疾病合并症的患者亚群更有可能再次入院。此外,精神疾病的遗传结构也表明与心血管疾病重叠。总之,在临床环境中评估药物、副作用和药物相互作用,以及使用数据挖掘方法评估基因组信息,可能有助于找到有助于降低精神疾病患者再入院率的因素。

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