INRA, Sorbonne University, iEES Paris, 4 Place Jussieu, 75252, Paris, Cedex, France.
Unité Molécules de Communication et Adaptation des Microorganismes (MCAM, UMR 7245), Muséum National d'Histoire Naturelle, CNRS, Case 39, 57 rue Cuvier, 75005, Paris, France.
Sci Rep. 2018 Sep 26;8(1):14416. doi: 10.1038/s41598-018-32772-w.
River biofilms dominated by Phormidium (cyanobacteria) are receiving increased attention worldwide because of a recent expansion in their distribution and their ability to produce neurotoxins leading to animal mortalities. Limited data are available on the composition and structure of bacterial communities (BCs) associated with Phormidium biofilms despite the important role they potentially play in biofilm functioning. By using a high-throughput sequencing approach, we compared the BCs associated with Phormidium biofilms in several sampling sites of the Tarn River (France) and in eight New Zealand rivers. The structure of the BCs from both countries displayed spatial and temporal variations but were well conserved at the order level and 28% of the OTUs containing 90% of the reads were shared by these BCs. This suggests that micro-environmental conditions occurring within thick Phormidium biofilms strongly shape the associated BCs. A strong and significant distance-decay relationship (r = 0.7; P = 0.001) was found in BCs from New Zealand rivers but the Bray-Curtis dissimilarities between French and New Zealand BCs are in the same order of magnitude of those found between New Zealand BCs. All these findings suggest that local environmental conditions seem to have more impact on BCs than dispersal capacities of bacteria.
由于其分布范围的扩大以及产生神经毒素导致动物死亡的能力,以蓝藻(Phormidium)为主导的河流生物膜受到了全世界越来越多的关注。尽管它们在生物膜功能中可能发挥着重要作用,但与 Phormidium 生物膜相关的细菌群落(BC)的组成和结构的相关数据仍然有限。本研究通过高通量测序方法,比较了法国 Tarn 河和新西兰 8 条河流的多个采样点的 Phormidium 生物膜相关的 BC。尽管两国的 BC 结构存在时空变化,但在目水平上保持着很好的保守性,并且包含 90%读数的 28%OTUs 在这些 BC 中共享。这表明在厚的 Phormidium 生物膜内发生的微环境条件强烈影响了相关的 BC。在新西兰河流的 BC 中发现了强烈且显著的距离衰减关系(r=0.7;P=0.001),但法国和新西兰的 BC 之间的 Bray-Curtis 差异与新西兰 BC 之间的差异处于同一数量级。所有这些发现表明,局部环境条件似乎对 BC 的影响比细菌的扩散能力更大。