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CTG18.1 扩张是俄罗斯欧洲部分队列中 10 个生物标志物中晚期 Fuchs 角膜营养不良的最佳分类器。

CTG18.1 Expansion is the Best Classifier of Late-Onset Fuchs' Corneal Dystrophy Among 10 Biomarkers in a Cohort From the European Part of Russia.

机构信息

Federal Research and Clinical Center of Physical-Chemical Medicine, Moscow, Russia.

S. Fyodorov Eye Microsurgery Complex Federal State Institution, Ministry of Health of Russian Federation, Moscow, Russia.

出版信息

Invest Ophthalmol Vis Sci. 2018 Sep 4;59(11):4748-4754. doi: 10.1167/iovs.18-24590.

Abstract

PURPOSE

To assess the occurrence and diagnostic performance of nine single-nucleotide variants (SNVs) in the TCF4, SLC4A11, LOXHD1, and AGBL1 genes and the CTG18.1 trinucleotide repeat expansion in a Russian cohort of Fuchs' endothelial corneal dystrophy (FECD) patients.

METHODS

This retrospective case-control study included 100 patients diagnosed with FECD (cases) and 100 patients with cataracts (controls). Blood DNA was used to perform PCR and subsequent Sanger sequencing of rs613872 and rs17595731 in TCF4, c.99-100delTC, rs267607065, rs267607064, and rs267607066 in SLC4A11, rs113444922 in LOXHD1, and rs181958589 and rs185919705 in AGBL1. The number of CTG18.1 trinucleotide repeats was determined by a combination of conventional PCR or triplet primed PCR with fragment analysis.

RESULTS

At least one rs613872 marker allele was found in 78% of FECD patients and 21% of controls, and at least one rs17595731 marker allele was found in 14% and 2%, respectively. CTG18.1 trinucleotide expansion (>40 repeats) was detected in 72% of FECD patients and 5% of controls. Marker alleles of the tested SNVs in SLC4A11, LOXHD1, and rs185919705 in AGBL1 were not found in our FECD cohort. One FECD patient carried the marker allele of the rs181958589 SNV. Analysis of the diagnostic performance of individual markers in TCF4 and their combinations showed that the CTG18.1 repeat expansion was the best classifier for FECD (AUC = 0.84).

CONCLUSIONS

Patients carrying CTG18.1 repeat expansion constituted a high proportion of the Russian FECD cohort; therefore, this marker is suitable for development of diagnostic and therapeutic approaches.

摘要

目的

评估 TCF4、SLC4A11、LOXHD1 和 AGBL1 基因中的九个单核苷酸变异(SNV)以及 CTG18.1 三核苷酸重复扩张在俄罗斯 Fuchs 内皮角膜营养不良(FECD)患者队列中的发生情况和诊断性能。

方法

本回顾性病例对照研究纳入了 100 名诊断为 FECD(病例)和 100 名白内障(对照)患者。使用血液 DNA 进行 PCR 及随后的 TCF4 中 rs613872 和 rs17595731、SLC4A11 中 c.99-100delTC、rs267607065、rs267607064 和 rs267607066、LOXHD1 中 rs1134449222 和 AGBL1 中 rs181958589 和 rs185919705 的 Sanger 测序。通过常规 PCR 或三引物 PCR 与片段分析相结合确定 CTG18.1 三核苷酸重复数。

结果

至少一个 rs613872 标记等位基因在 78%的 FECD 患者和 21%的对照组中发现,至少一个 rs17595731 标记等位基因在 14%和 2%的对照组中发现。72%的 FECD 患者和 5%的对照组中检测到 CTG18.1 三核苷酸扩张(>40 个重复)。在我们的 FECD 队列中未发现 SLC4A11、LOXHD1 和 AGBL1 中 rs185919705 的测试 SNV 标记等位基因。一名 FECD 患者携带 rs181958589 SNV 的标记等位基因。对 TCF4 中单个标记及其组合的诊断性能进行分析表明,CTG18.1 重复扩张是 FECD 的最佳分类器(AUC=0.84)。

结论

携带 CTG18.1 重复扩张的患者构成了俄罗斯 FECD 队列的很大一部分;因此,该标记物适合开发诊断和治疗方法。

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