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来自Fuchs内皮性角膜营养不良患者的角膜内皮转录组分析数据集。

Dataset on transcriptome profiling of corneal endothelium from patients with Fuchs endothelial corneal dystrophy.

作者信息

Nikitina Anastasia S, Belodedova Alexandra V, Malyugin Boris E, Sharova Elena I, Kostryukova Elena S, Larin Andrey K, Veselovsky Vladimir A, Antonova Olga P, Skorodumova Liubov O

机构信息

Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.

Moscow Institute of Physics and Technology, Dolgoprudnyi, Russia.

出版信息

Data Brief. 2019 May 23;25:104047. doi: 10.1016/j.dib.2019.104047. eCollection 2019 Aug.

Abstract

Fuchs endothelial corneal dystrophy (FECD) is a bilateral inherited eye disease with advanced forms only treatable by corneal transplantation. The pathogenesis of FECD has not been worked out yet, however, trinucleotide repeat polymorphism CTG18.1 in the TCF4 gene has recently been associated with late-onset FECD. Gene expression profiling of corneal endothelium with and without this expansion can help elucidate molecular mechanisms of the disease development. Current data article represents whole transcriptome profiles of corneal endothelium obtained from 12 patients with FECD and 6 control tissues from eye bank donors. RNA sequencing data is available at NCBI Sequence Read Archive under Accession No. PRJNA524323. In addition, each patient and donor were genotyped for CTG18.1 expansion and the corresponding numbers of CTG repeats in the TCF4 gene are provided within this article. The dataset includes samples from FECD patients both with and without CTG18.1 expansion.

摘要

富克斯角膜内皮营养不良(FECD)是一种双侧遗传性眼病,其晚期形式只能通过角膜移植治疗。然而,FECD的发病机制尚未明确,不过,近期研究发现TCF4基因中的三核苷酸重复多态性CTG18.1与迟发性FECD有关。对具有和不具有这种扩增的角膜内皮进行基因表达谱分析,有助于阐明该疾病发展的分子机制。当前的数据文章展示了从12例FECD患者和6例眼库供体的对照组织中获得的角膜内皮全转录组图谱。RNA测序数据可在NCBI序列读取存档库中获取,登录号为PRJNA524323。此外,对每位患者和供体进行了CTG18.1扩增的基因分型,并在本文中提供了TCF4基因中相应的CTG重复次数。该数据集包括来自有和没有CTG18.1扩增的FECD患者的样本。

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