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一种响应面优化方法,用于调整心脏电生理模型的离子电流传导率。在钾离子浓度变化研究中的应用。

A response surface optimization approach to adjust ionic current conductances of cardiac electrophysiological models. Application to the study of potassium level changes.

机构信息

Universidad San Jorge, Villanueva de Gállego, Zaragoza, Spain.

Aragón Institute for Engineering Research, University of Zaragoza, IIS Aragón, Spain.

出版信息

PLoS One. 2018 Oct 3;13(10):e0204411. doi: 10.1371/journal.pone.0204411. eCollection 2018.

Abstract

Cardiac electrophysiological computational models are often developed from previously published models. The new models may incorporate additional features to adapt the model to a different species or may upgrade a specific ionic formulation based on newly available experimental data. A relevant challenge in the development of a new model is the estimation of certain ionic current conductances that cannot be reliably identified from experiments. A common strategy to estimate those conductances is by means of constrained non-linear least-squares optimization. In this work, a novel methodology is proposed for estimation of ionic current conductances of cardiac electrophysiological models by using a response surface approximation-based constrained optimization with trust region management. Polynomial response surfaces of a number of electrophysiological markers were built using statistical sampling methods. These markers included action potential duration (APD), triangulation, diastolic and systolic intracellular calcium concentration, and time constants of APD rate adaptation. The proposed methodology was applied to update the Carro et al. human ventricular action potential model after incorporation of intracellular potassium ([K+]i) dynamics. While the Carro et al. model was well suited for investigation of arrhythmogenesis, it did not allow simulation of [K+]i changes. With the methodology proposed in this study, the updated Carro et al. human ventricular model could be used to simulate [K+]i changes in response to varying extracellular potassium ([K+]o) levels. Additionally, it rendered values of evaluated electrophysiological markers within physiologically plausible ranges. The optimal values of ionic current conductances in the updated model were found in a notably shorter time than with previously proposed methodologies. As a conclusion, the response surface optimization-based approach proposed in this study allows estimating ionic current conductances of cardiac electrophysiological computational models while guaranteeing replication of key electrophysiological features and with an important reduction in computational cost with respect to previously published approaches. The updated Carro et al. model developed in this study is thus suitable for the investigation of arrhythmic risk-related conditions, including those involving large changes in potassium concentration.

摘要

心脏电生理计算模型通常是基于先前发表的模型进行开发的。新模型可能会加入其他特性,以适应不同物种的模型,或者可能会根据新的可用实验数据升级特定的离子公式。在新模型的开发中,一个相关的挑战是估计某些离子电流电导,这些电导无法从实验中可靠地识别。估计这些电导的常用策略是通过受约束的非线性最小二乘优化。在这项工作中,提出了一种新的方法,用于通过使用基于响应面逼近的受约束优化和信任区域管理来估计心脏电生理模型的离子电流电导。使用统计抽样方法构建了许多电生理标记物的多项式响应面。这些标记物包括动作电位持续时间 (APD)、三角化、舒张和收缩细胞内钙浓度以及 APD 率适应的时间常数。提出的方法应用于在纳入细胞内钾 ([K+]i) 动力学后更新 Carro 等人的人类心室动作电位模型。虽然 Carro 等人的模型非常适合心律失常发生的研究,但它不允许模拟 [K+]i 的变化。使用本研究中提出的方法,可以使用更新的 Carro 等人的人类心室模型模拟 [K+]i 的变化,以响应变化的细胞外钾 ([K+]o) 水平。此外,它还提供了评估电生理标记物的值在生理上合理的范围内。在更新的模型中,离子电流电导的最优值在明显短于以前提出的方法的时间内找到。总之,本研究中提出的基于响应面优化的方法允许估计心脏电生理计算模型的离子电流电导,同时保证复制关键电生理特征,并与以前发表的方法相比大大降低了计算成本。因此,本研究中开发的更新的 Carro 等人的模型适合研究与心律失常风险相关的条件,包括涉及钾浓度大幅变化的条件。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b332/6169915/630d6c686691/pone.0204411.g001.jpg

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