• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过CRISPR诱导缺失形成与人类成纤维细胞重编程相结合来生成功能丧失型诱导多能干细胞系

Generating Loss-of-function iPSC Lines with Combined CRISPR Indel Formation and Reprogramming from Human Fibroblasts.

作者信息

Tidball Andrew M, Swaminathan Preethi, Dang Louis T, Parent Jack M

机构信息

Department of Neurology, University of Michigan Medical School, Ann Arbor, MI, USA.

Department of Pediatrics, University of Michigan Medical School, Ann Arbor, MI, USA.

出版信息

Bio Protoc. 2018 Apr 5;8(7). doi: 10.21769/BioProtoc.2794.

DOI:10.21769/BioProtoc.2794
PMID:30320153
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6178974/
Abstract

For both disease and basic science research, loss-of-function (LOF) mutations are vitally important. Herein, we provide a simple stream-lined protocol for generating LOF iPSC lines that circumvents the technical challenges of traditional gene-editing and cloning of established iPSC lines by combining the introduction of the CRISPR vector concurrently with episomal reprogramming plasmids into fibroblasts. Our experiments have produced nearly even numbers of all 3 genotypes in autosomal genes. In addition, we provide a detailed approach for maintaining and genotyping 96-well plates of iPSC clones.

摘要

对于疾病研究和基础科学研究而言,功能丧失(LOF)突变都至关重要。在此,我们提供了一种简单的简化方案,用于生成LOF诱导多能干细胞(iPSC)系,该方案通过将CRISPR载体与游离重编程质粒同时导入成纤维细胞,规避了传统基因编辑和已建立的iPSC系克隆的技术挑战。我们的实验在常染色体基因中产生了几乎数量均等的所有3种基因型。此外,我们还提供了一种详细的方法,用于维持iPSC克隆的96孔板并进行基因分型。

相似文献

1
Generating Loss-of-function iPSC Lines with Combined CRISPR Indel Formation and Reprogramming from Human Fibroblasts.通过CRISPR诱导缺失形成与人类成纤维细胞重编程相结合来生成功能丧失型诱导多能干细胞系
Bio Protoc. 2018 Apr 5;8(7). doi: 10.21769/BioProtoc.2794.
2
Rapid Generation of Human Genetic Loss-of-Function iPSC Lines by Simultaneous Reprogramming and Gene Editing.通过同步重编程和基因编辑快速生成人类遗传功能丧失 iPSC 系。
Stem Cell Reports. 2017 Sep 12;9(3):725-731. doi: 10.1016/j.stemcr.2017.07.003. Epub 2017 Aug 3.
3
Simultaneous reprogramming and gene editing of human fibroblasts.人成纤维细胞的同步重编程和基因编辑。
Nat Protoc. 2018 May;13(5):875-898. doi: 10.1038/nprot.2018.007. Epub 2018 Apr 5.
4
Generation of human iPSCs from cells of fibroblastic and epithelial origin by means of the oriP/EBNA-1 episomal reprogramming system.通过oriP/EBNA-1附加体重编程系统从成纤维细胞和上皮来源的细胞中生成人诱导多能干细胞。
Stem Cell Res Ther. 2015 Jun 19;6(1):122. doi: 10.1186/s13287-015-0112-3.
5
Optimization of episomal reprogramming for generation of human induced pluripotent stem cells from fibroblasts.用于从成纤维细胞生成人诱导多能干细胞的附加型重编程的优化。
Anim Cells Syst (Seoul). 2018 Mar 15;22(2):132-139. doi: 10.1080/19768354.2018.1451367. eCollection 2018.
6
Genome Editing in Induced Pluripotent Stem Cells using CRISPR/Cas9.利用 CRISPR/Cas9 进行诱导多能干细胞中的基因组编辑。
Stem Cell Rev Rep. 2018 Jun;14(3):323-336. doi: 10.1007/s12015-018-9811-3.
7
Generation of iPSC line from a Parkinson patient with PARK7 mutation and CRISPR-edited Gibco human episomal iPSC line to mimic PARK7 mutation.从一位携带 PARK7 突变的帕金森病患者和经 CRISPR 编辑的 Gibco 人 episomal iPSC 系中生成 iPSC 系,以模拟 PARK7 突变。
Stem Cell Res. 2021 Aug;55:102506. doi: 10.1016/j.scr.2021.102506. Epub 2021 Aug 17.
8
A simple, quick, and efficient CRISPR/Cas9 genome editing method for human induced pluripotent stem cells.一种用于人类诱导多能干细胞的简单、快速、高效的 CRISPR/Cas9 基因组编辑方法。
Acta Pharmacol Sin. 2020 Nov;41(11):1427-1432. doi: 10.1038/s41401-020-0452-0. Epub 2020 Jun 18.
9
CRISPR/Cas9-mediated Precise SNP Editing in Human iPSC Lines.CRISPR/Cas9介导的人诱导多能干细胞系中精确单核苷酸多态性编辑
Bio Protoc. 2021 Jun 20;11(12):e4051. doi: 10.21769/BioProtoc.4051.
10
Reprogramming Methods Do Not Affect Gene Expression Profile of Human Induced Pluripotent Stem Cells.重编程方法不影响人类诱导多能干细胞的基因表达谱。
Int J Mol Sci. 2017 Jan 20;18(1):206. doi: 10.3390/ijms18010206.

引用本文的文献

1
Deriving early single-rosette brain organoids from human pluripotent stem cells.从人类多能干细胞中衍生出早期的单个莲座脑类器官。
Stem Cell Reports. 2023 Dec 12;18(12):2498-2514. doi: 10.1016/j.stemcr.2023.10.020. Epub 2023 Nov 22.
2
Recent Advances in CRISPR/Cas9 Delivery Approaches for Therapeutic Gene Editing of Stem Cells.CRISPR/Cas9 递送方法在干细胞治疗性基因编辑中的最新进展。
Stem Cell Rev Rep. 2023 Nov;19(8):2576-2596. doi: 10.1007/s12015-023-10585-3. Epub 2023 Sep 18.
3
Simultaneous high-efficiency base editing and reprogramming of patient fibroblasts.同时高效地对患者成纤维细胞进行碱基编辑和重编程。
Stem Cell Reports. 2021 Dec 14;16(12):3064-3075. doi: 10.1016/j.stemcr.2021.10.017. Epub 2021 Nov 24.
4
CRISPR/Cas9-mediated Precise SNP Editing in Human iPSC Lines.CRISPR/Cas9介导的人诱导多能干细胞系中精确单核苷酸多态性编辑
Bio Protoc. 2021 Jun 20;11(12):e4051. doi: 10.21769/BioProtoc.4051.
5
Variant-specific changes in persistent or resurgent sodium current in SCN8A-related epilepsy patient-derived neurons.SCN8A 相关癫痫患者源性神经元中持续或复发钠电流的变异体特异性变化。
Brain. 2020 Oct 1;143(10):3025-3040. doi: 10.1093/brain/awaa247.
6
Episomal Induced Pluripotent Stem Cells: Functional and Potential Therapeutic Applications.类胚胎干细胞:功能与潜在的治疗应用。
Cell Transplant. 2019 Dec;28(1_suppl):112S-131S. doi: 10.1177/0963689719886534. Epub 2019 Nov 14.
7
An Efficient Protocol for Single-Cell Cloning Human Pluripotent Stem Cells.一种高效的人多能干细胞单细胞克隆方案。
Front Cell Dev Biol. 2019 Jan 31;7:11. doi: 10.3389/fcell.2019.00011. eCollection 2019.
8
Channelopathy as a SUDEP Biomarker in Dravet Syndrome Patient-Derived Cardiac Myocytes.通道病作为 Dravet 综合征患者来源的心肌细胞中 SUDEP 的生物标志物。
Stem Cell Reports. 2018 Sep 11;11(3):626-634. doi: 10.1016/j.stemcr.2018.07.012. Epub 2018 Aug 23.

本文引用的文献

1
Rapid Generation of Human Genetic Loss-of-Function iPSC Lines by Simultaneous Reprogramming and Gene Editing.通过同步重编程和基因编辑快速生成人类遗传功能丧失 iPSC 系。
Stem Cell Reports. 2017 Sep 12;9(3):725-731. doi: 10.1016/j.stemcr.2017.07.003. Epub 2017 Aug 3.
2
A Cas9 Variant for Efficient Generation of Indel-Free Knockin or Gene-Corrected Human Pluripotent Stem Cells.一种用于高效产生无插入缺失敲入或基因校正人类多能干细胞的Cas9变体。
Stem Cell Reports. 2016 Sep 13;7(3):508-517. doi: 10.1016/j.stemcr.2016.07.001. Epub 2016 Aug 4.
3
Simultaneous Reprogramming and Gene Correction of Patient Fibroblasts.患者成纤维细胞的同步重编程和基因校正。
Stem Cell Reports. 2015 Dec 8;5(6):1109-1118. doi: 10.1016/j.stemcr.2015.10.009. Epub 2015 Nov 12.
4
Temporal analysis of genome alterations induced by single-cell passaging in human embryonic stem cells.人胚胎干细胞单细胞传代诱导的基因组改变的时间分析。
Stem Cells Dev. 2015 Mar 1;24(5):653-62. doi: 10.1089/scd.2014.0292. Epub 2014 Nov 25.
5
Quantifying genome-editing outcomes at endogenous loci with SMRT sequencing.利用单分子实时测序对内源基因座的基因组编辑结果进行定量分析。
Cell Rep. 2014 Apr 10;7(1):293-305. doi: 10.1016/j.celrep.2014.02.040. Epub 2014 Mar 27.
6
Isolation of single-base genome-edited human iPS cells without antibiotic selection.无抗生素选择的单碱基基因组编辑人类诱导多能干细胞的分离。
Nat Methods. 2014 Mar;11(3):291-3. doi: 10.1038/nmeth.2840. Epub 2014 Feb 9.
7
Physiologic oxygen enhances human embryonic stem cell clonal recovery and reduces chromosomal abnormalities.生理性氧气可提高人类胚胎干细胞的克隆恢复率并减少染色体异常。
Cloning Stem Cells. 2006;8(1):16-23. doi: 10.1089/clo.2006.8.16.