Marine Biological Section, Department of Biology, University of Copenhagen, 3000 Helsingør, Denmark;
Department of Marine Earth and Atmospheric Sciences, North Carolina State University, Raleigh, NC 27695.
Proc Natl Acad Sci U S A. 2018 Oct 30;115(44):E10447-E10456. doi: 10.1073/pnas.1806425115. Epub 2018 Oct 15.
Vitamin B1 (B1 herein) is a vital enzyme cofactor required by virtually all cells, including bacterioplankton, which strongly influence aquatic biogeochemistry and productivity and modulate climate on Earth. Intriguingly, bacterioplankton can be de novo B1 synthesizers or B1 auxotrophs, which cannot synthesize B1 de novo and require exogenous B1 or B1 precursors to survive. Recent isolate-based work suggests select abundant bacterioplankton are B1 auxotrophs, but direct evidence of B1 auxotrophy among natural communities is scant. In addition, it is entirely unknown if bulk bacterioplankton growth is ever B1-limited. We show by surveying for B1-related genes in estuarine, marine, and freshwater metagenomes and metagenome-assembled genomes (MAGs) that most naturally occurring bacterioplankton are B1 auxotrophs. Pyrimidine B1-auxotrophic bacterioplankton numerically dominated metagenomes, but multiple other B1-auxotrophic types and distinct uptake and B1-salvaging strategies were also identified, including dual (pyrimidine and thiazole) and intact B1 auxotrophs that have received little prior consideration. Time-series metagenomes from the Baltic Sea revealed pronounced shifts in the prevalence of multiple B1-auxotrophic types and in the B1-uptake and B1-salvaging strategies over time. Complementarily, we documented B1/precursor limitation of bacterioplankton production in three of five nutrient-amendment experiments at the same time-series station, specifically when intact B1 concentrations were ≤3.7 pM, based on bioassays with a genetically engineered B1-auxotrophic strain. Collectively, the data presented highlight the prevalent reliance of bacterioplankton on exogenous B1/precursors and on the bioavailability of the micronutrients as an overlooked factor that could influence bacterioplankton growth and succession and thereby the cycling of nutrients and energy in aquatic systems.
维生素 B1(以下简称 B1)是一种几乎所有细胞都必需的关键酶辅因子,包括细菌浮游生物,它们强烈影响水生生物地球化学和生产力,并调节地球上的气候。有趣的是,细菌浮游生物可以是从头合成 B1 的生物或 B1 营养缺陷型,它们不能从头合成 B1,需要外源性 B1 或 B1 前体才能存活。最近基于分离物的研究表明,一些丰富的细菌浮游生物是 B1 营养缺陷型,但关于自然群落中 B1 营养缺陷型的直接证据很少。此外,完全不清楚细菌浮游生物的总体生长是否受到 B1 的限制。通过调查河口、海洋和淡水宏基因组和宏基因组组装基因组(MAG)中的 B1 相关基因,我们表明,大多数自然存在的细菌浮游生物都是 B1 营养缺陷型。嘧啶 B1 营养缺陷型细菌浮游生物在宏基因组中数量上占主导地位,但也鉴定出了其他多种 B1 营养缺陷型和不同的摄取和 B1 回收策略,包括双(嘧啶和噻唑)和完整的 B1 营养缺陷型,这些类型以前很少受到关注。波罗的海的时间序列宏基因组揭示了随着时间的推移,多种 B1 营养缺陷型和 B1 摄取和 B1 回收策略的流行程度发生了明显变化。作为补充,我们在同一时间序列站点的五个营养添加实验中的三个实验中同时记录了细菌浮游生物生产受到 B1/前体限制的情况,特别是当完整的 B1 浓度≤3.7 pM 时,这是基于对具有遗传工程 B1 营养缺陷型菌株的生物测定得出的。总的来说,所提出的这些数据强调了细菌浮游生物对外源性 B1/前体的普遍依赖,以及微量元素的生物可利用性是一个被忽视的因素,它可能影响细菌浮游生物的生长和演替,从而影响水生系统中营养物质和能量的循环。