Shumilov V Iu
Mol Biol (Mosk). 1987 Jan-Feb;21(1):200-23.
It was found that CRP-cAMP-recognized sequences in DNA being suggested as GTGN7-11CAC (with variability both in domain's structures and in spacer's length) are located non-randomly in promoters. In CRP-cAMP-stimulated promoters they lie upstream the "-35" box and are separated from it by a whole number of DNA turns, whereas in CRP-cAMP-repressed ones they are located downstream "-35" in a half-whole-turn-number distance. Several CRP-, SOS- and NR1-sites in the phi X174 DNA sequence were found and a few new promoters were deduced from it. PCRP1 lies within gene F and has both CRR and ntrC sites and one SOS-operator, PCRP3 (in gene A) has a CRP site which overlaps with the SOS-operator, PA and PCRP2 (in gene G) have sCRP and PD has a stringent discriminator. Four promotors, PCRP1, PCRP2, PA and PB are cloned in the pBR322 plasmid. For cloned PCRP1 the activation by exogenous cAMP and the SOS-induction by the mitomycin C were observed in vivo in pVYB215-containing cells by increasing the levels of beta-lactamase up to 27-fold. The new gene L of the phi X174 is deduced from the DNA sequence. It has two start points, overlaps the gene F inside it and codes for peptides 23 or 19 amino acids in length. These lethal peptides have strong homology in sequence to the cellular protein sulA(sfiA) of E. coli, and L* can cause observed filamentation and death of pVYB215- bearing cells after PCRP1 induction. In the A and A* protein sequences two domains "helix-turn-helix" were found that are homologous to those in CRP and repressors; this makes possible the competition between A* and CRT for its DNA sites that also have some homology. The model of the phi X174 infection cycle control and mechanisms of DNA recognition by CRP-CAMP are discussed. PCRP1 is the first promotor controlled by both three global regulons of E. coli cell.
研究发现,DNA中CRP - cAMP识别序列(推测为GTGN7 - 11CAC,结构域结构和间隔长度均存在变异性)在启动子中的定位并非随机。在CRP - cAMP刺激的启动子中,它们位于“-35”框上游,并与它相隔整数个DNA螺旋圈;而在CRP - cAMP抑制的启动子中,它们位于“-35”下游半个螺旋圈的距离处。在phi X174 DNA序列中发现了几个CRP、SOS和NR1位点,并由此推断出一些新的启动子。PCRP1位于基因F内,具有CRR和ntrC位点以及一个SOS操纵子,PCRP3(在基因A中)有一个与SOS操纵子重叠的CRP位点,PA和PCRP2(在基因G中)有sCRP,PD有一个严格鉴别子。四个启动子,PCRP1、PCRP2、PA和PB被克隆到pBR322质粒中。对于克隆的PCRP1,通过在含pVYB215的细胞中体内观察到β - 内酰胺酶水平提高至27倍,发现了外源性cAMP的激活作用以及丝裂霉素C的SOS诱导作用。phi X174的新基因L是从DNA序列推断出来的。它有两个起始点,在内部与基因F重叠,编码长度为23或19个氨基酸的肽段。这些致死肽在序列上与大肠杆菌的细胞蛋白sulA(sfiA)具有很强的同源性,并且在PCRP1诱导后,L可导致携带pVYB215的细胞出现观察到的丝状化和死亡。在A和A蛋白序列中发现了两个“螺旋 - 转角 - 螺旋”结构域,它们与CRP和阻遏物中的结构域同源;这使得A*和CRT之间有可能竞争其同样具有一些同源性的DNA位点。讨论了phi X174感染周期控制模型以及CRP - CAMP对DNA的识别机制。PCRP1是第一个受大肠杆菌细胞三个全局调控子共同控制的启动子。