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鉴定具有抗癫痫和抗乳腺癌双重作用的新型支架。

Identification of Novel Scaffolds with Dual Role as Antiepileptic and Anti-Breast Cancer.

出版信息

IEEE/ACM Trans Comput Biol Bioinform. 2019 Sep-Oct;16(5):1663-1674. doi: 10.1109/TCBB.2018.2855138. Epub 2018 Oct 12.

Abstract

Aromatase inhibitors with an $\mathrm{IC}_{50}$ IC 50 value ranging from 1.4 to 49.7 µM are known to act as antiepileptic drugs besides being potential breast cancer inhibitors. The aim of the present study is to identify novel antiepileptic aromatase inhibitors with higher activity exploiting the ligand-based pharmacophore approach utilizing the experimentally known inhibitors. The resultant Hypo1 consists of four features and was further validated by using three different strategies. Hypo1 was allowed to screen different databases to identify lead molecules and were further subjected to Lipinski's Rule of Five and ADMET to establish their drug-like properties. Consequently, the obtained 68-screened molecules were subjected to molecular docking by GOLD v5.2.2. Furthermore, the compounds with the highest dock scores were assessed for molecular interactions. Later, the MD simulation was applied to evaluate the protein backbone stabilities and binding energies adapting GROMACS v5.0.6 and MM/PBSA which was followed by the density functional theory (DFT), to analyze their orbital energies, and further the energy gap between them. Eventually, the number of Hit molecules was culled to three projecting Hit1, Hit2, and Hit3 as the potential lead compounds based on their highest dock scores, hydrogen bond interaction, lowest energy gap, and the least binding energies and stable MD results.

摘要

已知具有 1.4 至 49.7 μM 的 $\mathrm{IC}_{50}$ 值的芳香酶抑制剂除了作为潜在的乳腺癌抑制剂外,还具有抗癫痫作用。本研究的目的是利用基于配体的药效团方法,利用实验已知的抑制剂,发现具有更高活性的新型抗癫痫芳香酶抑制剂。由此产生的 Hypo1 由四个特征组成,并通过使用三种不同的策略进一步验证。Hypo1 被允许筛选不同的数据库以识别先导分子,并进一步进行 Lipinski 的五规则和 ADMET 以建立其类药性。因此,获得的 68 个筛选分子通过 GOLD v5.2.2 进行分子对接。此外,对具有最高对接分数的化合物进行分子相互作用评估。之后,应用 MD 模拟评估蛋白质骨架稳定性和结合能,使用 GROMACS v5.0.6 和 MM/PBSA,然后进行密度泛函理论 (DFT),分析它们的轨道能,以及它们之间的能隙。最终,根据最高对接分数、氢键相互作用、最低能隙、最低结合能和稳定的 MD 结果,将命中分子的数量减少到三个,预测为潜在的先导化合物 Hit1、Hit2 和 Hit3。

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