Department of Chemical Engineering, Columbia University, New York City, NY, USA.
FEBS Lett. 2018 Nov;592(21):3504-3515. doi: 10.1002/1873-3468.13277. Epub 2018 Nov 2.
SNARE proteins constitute the core of the exocytotic membrane fusion machinery. Fusion occurs when vesicle-associated and target membrane-associated SNAREs zipper into trans-SNARE complexes ('SNAREpins'), but the number required is controversial and the mechanism of cooperative fusion is poorly understood. We developed a highly coarse-grained molecular dynamics simulation to access the long fusion timescales, which revealed a two-stage process. First, zippering energy was dissipated and cooperative entropic forces assembled the SNAREpins into a ring; second, entropic forces expanded the ring, pressing membranes together and catalyzing fusion. We predict that any number of SNAREs fuses membranes, but fusion is faster with more SNAREs.
SNARE 蛋白构成了胞吐膜融合机制的核心。当囊泡相关和靶膜相关的 SNARE 蛋白形成跨 SNARE 复合物(“SNAREpins”)时,融合就会发生,但所需的数量存在争议,而且协同融合的机制还不太清楚。我们开发了一种高度粗粒化的分子动力学模拟来研究长融合时间尺度,结果表明这是一个两阶段的过程。首先,拉链能量被耗散,协同的熵力将 SNAREpins 组装成一个环;其次,熵力扩展了环,将膜压在一起并催化融合。我们预测任何数量的 SNARE 蛋白都可以融合膜,但有更多的 SNARE 蛋白时融合速度会更快。