通过计算机筛选和活性特征分析鉴定亚洲巨石斑鱼(Lates calcarifer)中的新型抗菌肽。
Identification of novel antimicrobial peptide from Asian sea bass (Lates calcarifer) by in silico and activity characterization.
机构信息
Department of Medical Laboratory Sciences, School of Paramedicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
The Persian Gulf Marine Biotechnology Research Center, the Persian Gulf Biomedical Sciences Research Institute, Bushehr University of Medical Sciences, Bushehr, Iran.
出版信息
PLoS One. 2018 Oct 26;13(10):e0206578. doi: 10.1371/journal.pone.0206578. eCollection 2018.
BACKGROUND
The global crisis of antibiotic resistance increases the demand for the new promising alternative drugs such as antimicrobial peptides (AMPs). Accordingly, we have described a new, previously unrecognized effective AMP, named dicentracin-like, from Asian sea bass and characterized its antimicrobial activity by comparison with moronecidin.
METHODOLOGY/ RESULTS: Gene expression analysis demonstrated the expression of dicentracin-like peptide in tissues of the immune system such as the skin and the head kidney, which is an important endocrine and lymphoid organ. Moronecidin and dicentracin-like exhibited a higher antibacterial activity against gram-positive bacteria relative to gram-negative ones, while both peptides showed a greater binding ability to gram-negative bacteria compared to gram-positive ones. This contradiction between antibacterial activity and binding affinity may be related to the outer membrane from gram-negative bacteria. Compared with moronecidin, dicentracin-like peptide showed more potent binding ability to all gram-positive and gram-negative bacteria. In addition, dicentracin-like peptide exhibited a high antibacterial activity against the investigated microorganisms, except against Staphylococcus aureus. A direct relationship was found between the binding affinity/cationicity and the antibiofilm activity of the peptides wherein, an elevation in pH corresponded to a decrease in their antibiofilm property. Time-kill kinetics analysis against clinical Acinetobacter baumannii isolate indicated that bactericidal effect of dicentracin-like and moronecidin at inhibitory concentration (1XMIC) was observed after 4 and 6 hours, respectively, while bactericidal effect of both AMPs at concentration of 2XMIC was observed after 2 hours. Dicentracin-like peptide showed higher inhibitory activity at subinhibitory concentration (1/2XMIC), relative to moronecidin. Compared with moronecidin, dicentracin-like peptide possessed greater binding affinity to bacteria at high salt concentration, as well as at alkaline pH; In addition, dicentracin-like exhibited a higher antibiofilm activity in comparison to moronecidin even at alkaline pH. Hemolytic analysis against human RBC revealed that hemolytic activity of moronecidin was more potent than that of dicentracin-like, which is consistent with its greater non-polar face hydrophobicity.
CONCLUSIONS
In the present study, In Silico comparative sequence analysis and antimicrobial characterization led to identify a new, previously unrecognized antimicrobial function for named dicentracin-like peptide by comparison with moronecidin, representing a possible template for designing new effective AMPs and improving known ones.
背景
抗生素耐药性的全球危机增加了对新的有前途的替代药物的需求,如抗菌肽 (AMPs)。因此,我们描述了一种新的、以前未被识别的有效 AMP,命名为来自亚洲鲈鱼的二嵌合素,并通过与莫罗尼定的比较来表征其抗菌活性。
方法/结果:基因表达分析表明,二嵌合素肽在皮肤和头肾等免疫系统组织中表达,头肾是一个重要的内分泌和淋巴器官。莫罗尼定和二嵌合素对革兰氏阳性菌的抗菌活性高于革兰氏阴性菌,而两种肽对革兰氏阴性菌的结合能力均大于革兰氏阳性菌。这种抗菌活性与结合亲和力之间的矛盾可能与革兰氏阴性菌的外膜有关。与莫罗尼定相比,二嵌合素肽与所有革兰氏阳性菌和革兰氏阴性菌的结合能力更强。此外,二嵌合素肽对所研究的微生物表现出很强的抗菌活性,除了对金黄色葡萄球菌。发现结合亲和力/阳离子性与肽的抗生物膜活性之间存在直接关系,其中 pH 值升高对应于其抗生物膜特性降低。对临床鲍曼不动杆菌分离株的时间杀伤动力学分析表明,二嵌合素和莫罗尼定在抑制浓度 (1XMIC) 下的杀菌作用分别在 4 小时和 6 小时后观察到,而两种 AMP 在浓度为 2XMIC 时在 2 小时后观察到杀菌作用。二嵌合素肽在亚抑制浓度 (1/2XMIC) 下表现出更高的抑制活性,相对于莫罗尼定。与莫罗尼定相比,二嵌合素肽在高盐浓度和碱性 pH 值下对细菌具有更高的结合亲和力;此外,即使在碱性 pH 值下,二嵌合素也表现出比莫罗尼定更高的抗生物膜活性。对人 RBC 的溶血分析表明,莫罗尼定的溶血活性比二嵌合素更强,这与其更大的非极性面疏水性一致。
结论
在本研究中,通过与莫罗尼定的比较,通过计算比较序列分析和抗菌特性鉴定了一种新的、以前未被识别的抗菌功能,命名为二嵌合素肽,这可能为设计新的有效 AMP 和改进已知 AMP 提供模板。