Department of Physical Chemistry, Indian Association for the Cultivation of Science, Kolkata, India.
Department of Chemistry, Asutosh College, Kolkata, India.
Spectrochim Acta A Mol Biomol Spectrosc. 2019 Feb 15;209:186-195. doi: 10.1016/j.saa.2018.10.031. Epub 2018 Oct 18.
Camphor is known to be held in the substrate pocket of cytochrome P450cam enzyme via H-bond with a tyrosine residue of the enzyme in a unique orientation. This structural exclusivity results in regio- and stereo-specific hydroxylation of camphor by the enzyme. We have carried out a combined IR spectroscopic and quantum chemical investigation to shed light on the factors influencing the conformational exclusivity of 1R-(+)-camphor in the substrate pocket of Cytochrome P450cam, and to determine whether the selectivity is an inherent property of the substrate itself, or is imposed by the enzyme. For this purpose, complexes of camphor have been studied with three H-bond donors namely phenol, methanol and chloroform. Each of the three donors was found to form stable complexes with two distinct conformers; the one mimicking the conformation in enzyme substrate pocket was found to be more stable of the two, for all three donors. Experimentally, both conformers of the H-bonded complexes were identified separately for phenol and methanol in an argon matrix at 8 K, but not for chloroform due to very small energy barrier for interconversion of the two conformers. In room temperature solution phase spectra of camphor with all three donors, the differences in spectral attributes between the two isomeric H-bonded complexes were lost due to thermal motions.
莰烯通过与酶中酪氨酸残基的氢键以独特的取向被认为被结合在细胞色素 P450cam 酶的基质口袋中。这种结构的独特性导致酶对莰烯进行区域和立体特异性羟化。我们进行了结合的红外光谱和量子化学研究,以阐明影响细胞色素 P450cam 基质口袋中 1R-(+)-莰烯构象独特性的因素,并确定选择性是底物本身的固有性质,还是由酶强加的。为此,已经研究了莰烯与三种氢键供体,即苯酚、甲醇和氯仿的复合物。发现这三种供体都与两种不同的构象形成稳定的复合物;对于所有三种供体,模拟酶基质口袋中构象的那个构象更为稳定。在 8 K 的氩基质中,实验分别鉴定了苯酚和甲醇的氢键复合物的两种构象,但对于氯仿则由于两种构象之间的互变异构能垒很小而无法鉴定。在室温下,在与所有三种供体的溶液相中,由于热运动,两种异构氢键复合物之间的光谱特征差异消失。