Institute for Diabetes and Cancer (IDC), Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.
Joint Heidelberg-IDC Translational Diabetes Program, Heidelberg University Hospital, Heidelberg, Germany.
BMC Genomics. 2018 Nov 3;19(1):794. doi: 10.1186/s12864-018-5173-0.
Norepinephrine (NE) signaling has a key role in white adipose tissue (WAT) functions, including lipolysis, free fatty acid liberation and, under certain conditions, conversion of white into brite (brown-in-white) adipocytes. However, acute effects of NE stimulation have not been described at the transcriptional network level.
We used RNA-seq to uncover a broad transcriptional response. The inference of protein-protein and protein-DNA interaction networks allowed us to identify a set of immediate-early genes (IEGs) with high betweenness, validating our approach and suggesting a hierarchical control of transcriptional regulation. In addition, we identified a transcriptional regulatory network with IEGs as master regulators, including HSF1 and NFIL3 as novel NE-induced IEG candidates. Moreover, a functional enrichment analysis and gene clustering into functional modules suggest a crosstalk between metabolic, signaling, and immune responses.
Altogether, our network biology approach explores for the first time the immediate-early systems level response of human adipocytes to acute sympathetic activation, thereby providing a first network basis of early cell fate programs and crosstalks between metabolic and transcriptional networks required for proper WAT function.
去甲肾上腺素(NE)信号在白色脂肪组织(WAT)功能中起着关键作用,包括脂肪分解、游离脂肪酸释放,以及在某些条件下将白色脂肪细胞转化为米色(白色脂肪中的棕色)脂肪细胞。然而,NE 刺激的急性效应在转录网络水平上尚未被描述。
我们使用 RNA-seq 来揭示广泛的转录反应。蛋白质-蛋白质和蛋白质-DNA 相互作用网络的推断使我们能够识别出一组具有高介数的早期基因(IEGs),验证了我们的方法,并表明转录调控的分层控制。此外,我们还鉴定了一个具有 IEGs 作为主要调控因子的转录调控网络,其中 HSF1 和 NFIL3 是新的 NE 诱导的 IEG 候选因子。此外,功能富集分析和基因聚类为功能模块表明代谢、信号和免疫反应之间存在串扰。
总的来说,我们的网络生物学方法首次探索了人类脂肪细胞对急性交感神经激活的即时早期系统水平反应,从而为早期细胞命运程序和代谢与转录网络之间所需的串扰提供了第一个网络基础,以维持 WAT 的正常功能。