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炼金术正则模式统一化学空间。

Alchemical Normal Modes Unify Chemical Space.

作者信息

Fias Stijn, Chang K Y Samuel, von Lilienfeld O Anatole

机构信息

General Chemistry (ALGC) , Vrije Universiteit Brussel (Free University Brussels - VUB) , Pleinlaan 2 , 1050 Brussel , Belgium.

Department of Chemistry & Chemical Biology , McMaster University , Hamilton , ON , Canada L8S 4L8.

出版信息

J Phys Chem Lett. 2019 Jan 3;10(1):30-39. doi: 10.1021/acs.jpclett.8b02805. Epub 2018 Dec 20.

Abstract

In silico design of new molecules and materials with desirable quantum properties by high-throughput screening is a major challenge due to the high dimensionality of chemical space. To facilitate its navigation, we present a unification of coordinate and composition space in terms of alchemical normal modes (ANMs) which result from second order perturbation theory. ANMs assume a predominantly smooth nature of chemical space and form a basis in which new compounds can be expanded and identified. We showcase the use of ANMs for the energetics of the isoelectronic series of diatomics with 14 electrons, BN doped benzene derivatives (C(BN) H with x = 0,1,2,3), predictions for over 1.8 million BN doped coronene derivatives, and genetic energy optimizations in the entire BN-doped coronene space. Using Ge lattice scans as reference, the applicability of ANMs across the periodic table is demonstrated for III-V and IV-IV semiconductors Si, Sn, SiGe, SnGe, SiSn, as well as AlP, AlAs, AlSb, GaP, GaAs, GaSb, InP, InAs, and InSb. Analysis of our results indicates simple qualitative structure property rules for estimating energetic rankings among isomers. Useful quantitative estimates can also be obtained when few atoms are changed to neighboring or lower lying elements in the periodic table. The quality of the predictions often increases with the symmetry of system chosen as reference due to cancellation of odd order terms. Rooted in perturbation theory, the ANM approach promises to generally enable unbiased compound exploration campaigns at reduced computational cost.

摘要

通过高通量筛选对具有理想量子特性的新分子和材料进行计算机辅助设计,由于化学空间的高维性,这是一项重大挑战。为了便于在化学空间中导航,我们提出了一种基于二阶微扰理论产生的炼金术正则模式(ANM)对坐标空间和组成空间进行统一的方法。ANM假定化学空间主要具有平滑性质,并形成一个可以扩展和识别新化合物的基。我们展示了ANM在具有14个电子的双原子等电子系列、BN掺杂的苯衍生物(x = 0,1,2,3的C(BN)H)的能量学方面的应用,对超过180万个BN掺杂的并五苯衍生物的预测,以及在整个BN掺杂的并五苯空间中的遗传能量优化。以Ge晶格扫描为参考,证明了ANM在周期表中对III-V族和IV-IV族半导体Si、Sn、SiGe、SnGe、SiSn,以及AlP、AlAs、AlSb、GaP、GaAs、GaSb、InP、InAs和InSb的适用性。对我们结果的分析表明,存在用于估计异构体能量排名的简单定性结构性质规则。当在周期表中将少数原子替换为相邻或更低位置的元素时,也可以获得有用的定量估计。由于奇数阶项的抵消,预测质量通常会随着所选参考系统的对称性增加而提高。基于微扰理论,ANM方法有望以降低的计算成本普遍实现无偏的化合物探索活动。

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