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从人类尿液中分离出的新型细菌——华西克雷伯菌。

Klebsiella huaxiensis sp. nov., recovered from human urine.

作者信息

Hu Yiyi, Wei Li, Feng Yu, Xie Yi, Zong Zhiyong

机构信息

2​Division of Infectious Diseases, State Key Laboratory of Biotherapy, Chengdu, PR China.

3​Center for Pathogen Research, West China Hospital, Sichuan University, Chengdu, PR China.

出版信息

Int J Syst Evol Microbiol. 2019 Feb;69(2):333-336. doi: 10.1099/ijsem.0.003102. Epub 2018 Nov 1.

Abstract

A strain of a member of the genus Klebsiella, WCHKl090001, was recovered from a human urine sample in PR China in 2017. Phylogenetic analysis based on gyrA and rpoB housekeeping genes revealed that the strain was distinct from any previously described species of the genus Klebsiella though it was clustered with the Klebsiella oxytoca phylogroup, including Klebsiella grimontii, Klebsiella michiganensis and Klebsiella oxytoca. The whole-genome sequence of strain WCHKl090001 has an up to 87.18 % average nucleotide identity with those of type strains of all known species of the genus Klebsiella. In silico DNA-DNA hybridization (isDDH) values between strain WCHKl090001 and type strains of all known species of the genus Klebsiella ranged from 22.3 to 35.2 %. Strain WCHKl090001 could be distinguished from species of the Klebsiella oxytocaphylogroup by its negative Voges-Proskauer reaction. Genotypic and phenotypic characteristics from this study indicate that strain WCHKl090001 should be considered to represent a novel species of the genus Klebsiella, for which the name Klebsiellahuaxiensis sp. nov. is proposed. The type strain is WCHKl090001 (=GDMCC 1.1379=CNCTC 7650).

摘要

2017年,在中国从一份人类尿液样本中分离出一株克雷伯菌属成员,即WCHKl090001。基于gyrA和rpoB管家基因的系统发育分析表明,该菌株与克雷伯菌属中任何先前描述的物种都不同,尽管它与产酸克雷伯菌群聚在一起,包括格氏克雷伯菌、密歇根克雷伯菌和产酸克雷伯菌。菌株WCHKl090001的全基因组序列与克雷伯菌属所有已知物种的模式菌株的平均核苷酸同一性高达87.18%。菌株WCHKl090001与克雷伯菌属所有已知物种的模式菌株之间的电子DNA-DNA杂交(isDDH)值在22.3%至35.2%之间。菌株WCHKl090001的Voges-Proskauer反应为阴性,可与产酸克雷伯菌群的物种区分开来。本研究的基因型和表型特征表明,菌株WCHKl‘090001应被视为代表克雷伯菌属的一个新物种,为此提出名为华西克雷伯菌(Klebsiella huaxiensis sp. nov.)的名称。模式菌株为WCHKl090001(=GDMCC 1.1379=CNCTC 7650)。

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