1Center of Infectious Diseases, West China Hospital, Sichuan University, Chengdu, PR China.
2Division of Infectious Diseases, State Key Laboratory of Biotherapy, Chengdu, PR China.
Int J Syst Evol Microbiol. 2019 Mar;69(3):708-714. doi: 10.1099/ijsem.0.003207.
Enterobacter strains 090008 and 090028 were recovered from the blood of two different patients at West China Hospital, Chengdu, PR China in 2017. Phylogenetic analysis based on the 16S rRNA gene and multi-locus sequence analysis of the rpoB, gyrB, infB and atpD housekeeping genes revealed that the two strains were distinct from any previously known species of the genus Enterobacter. Both average nucleotide identity (ANI) and in silico DNA-DNA hybridization (isDDH) values between strains 090008, 090028 and type strains of all known Enterobacter species were lower than the cut-off (≥95-96 % for ANI and ≥70 % for isDDH) to define a bacterial species. The major cellular fatty acids of strains 090008 and 090028 are C16 : 0, C17 : 0cyclo and C18 : 1ω7c, which are similar to other Enterobacter species, and the genomic DNA G+C content was 55.73 and 55.68 mol%, respectively. Strain 090008 can be differentiated from other Enterobacter species by its ability to ferment sucrose, melibiose and d-arabitol, but with a negative methyl α-d-mannopyranoside reaction. Strain 090028 can ferment potassium gluconate, but is negative for l-fucose, mdecarboxylase, deaminase aelibiose and d-sorbitol, which distinguishes it from all other Enterobacter species. Genotypic and phenotypic characteristics indicate that strains 090008 and 090028 represent two novel species of the genus Enterobacter, for which the names Enterobacter huaxiensissp. nov. and Enterobacter chuandaensis sp. nov. are proposed, respectively. The type strain of Enterobacter huaxiensissp. nov. is 090008 (=GDMCC1.1426=CCTCC AB 2018174=CNCTC 7648) and the type strain of Enterobacter chuandaensissp. nov. is 090028 (=GDMCC1.1427=CCTCC AB 2018173=CNCTC 7649).
肠杆菌菌株 090008 和 090028 于 2017 年从中国成都华西医院的两名不同患者的血液中分离得到。基于 16S rRNA 基因和 rpoB、gyrB、infB 和 atpD 看家基因的多基因序列分析,这两株菌与肠杆菌属的任何已知种均明显不同。菌株 090008、090028 与所有已知肠杆菌种的模式株之间的平均核苷酸同一性(ANI)和体外 DNA-DNA 杂交(isDDH)值均低于定义细菌种的界限值(ANI≥95-96%,isDDH≥70%)。菌株 090008 和 090028 的主要细胞脂肪酸为 C16:0、C17:0cyclo 和 C18:1ω7c,与其他肠杆菌种相似,基因组 DNA G+C 含量分别为 55.73 和 55.68mol%。菌株 090008 可通过其发酵蔗糖、棉子糖和 D-阿拉伯糖醇的能力与其他肠杆菌种相区别,但甲基 α-D-甘露吡喃糖苷反应呈阴性。菌株 090028 可发酵 D-葡萄糖酸,但 L-岩藻糖、脱羧酶、脱氨酶阿拉伯糖和 D-山梨醇反应呈阴性,这使其与所有其他肠杆菌种相区别。基因型和表型特征表明,菌株 090008 和 090028 代表肠杆菌属的两个新种,分别命名为肠杆菌华西亚种(Enterobacter huaxiensissp. nov.)和肠杆菌传代亚种(Enterobacter chuandaensissp. nov.)。肠杆菌华西亚种的模式菌株为 090008(=GDMCC1.1426=CCTCC AB 2018174=CNCTC 7648),肠杆菌传代亚种的模式菌株为 090028(=GDMCC1.1427=CCTCC AB 2018173=CNCTC 7649)。