线虫基因组公告：水稻根结线虫基因组草图
Nematode Genome Announcement: A Draft Genome for Rice Root-Knot Nematode, .
作者信息
Somvanshi Vishal Singh, Tathode Madhura, Shukla Rohit Nandan, Rao Uma
机构信息
Division of Nematology, ICAR-Indian Agricultural Research Institute, LBS Center, PUSA Campus, New Delhi 110012, India.
Bionivid Technology Private Limited, 209, 4th Cross, Kasturi Nagar, Bangalore 560043, India.
出版信息
J Nematol. 2018 Sep 3;50(2):111-116. doi: 10.21307/jofnem-2018-018.
Abstract
The rice root-knot nematode Meloidogyne graminicola has emerged as a devastating pest of rice in South-East Asian countries. Here we present a draft genome sequence for M. graminicola , assembled using data from short and long insert libraries sequenced on Illumina GAIIx sequencing platform.
摘要
稻根结线虫（Meloidogyne graminicola）已成为东南亚国家水稻的一种毁灭性害虫。在此，我们展示了稻根结线虫的基因组序列草图，该草图是利用在Illumina GAIIx测序平台上对短插入片段文库和长插入片段文库进行测序得到的数据组装而成的。
相似文献
1
Nematode Genome Announcement: A Draft Genome for Rice Root-Knot Nematode, .
J Nematol. 2018 Sep 3;50(2):111-116. doi: 10.21307/jofnem-2018-018.
2
An improved draft genome assembly of Meloidogyne graminicola IARI strain using long-read sequencing.
Gene. 2021 Aug 15;793:145748. doi: 10.1016/j.gene.2021.145748. Epub 2021 May 30.
3
QTL mapping for resistance to and tolerance for the rice root-knot nematode, Meloidogyne graminicola.
BMC Genet. 2018 Aug 6;19(1):53. doi: 10.1186/s12863-018-0656-1.
4
Genome structure and content of the rice root-knot nematode ().
Ecol Evol. 2020 Sep 13;10(20):11006-11021. doi: 10.1002/ece3.6680. eCollection 2020 Oct.
5
Interactions between the oomycete Pythium arrhenomanes and the rice root-knot nematode Meloidogyne graminicola in aerobic Asian rice varieties.
Rice (N Y). 2016 Dec;9(1):36. doi: 10.1186/s12284-016-0108-3. Epub 2016 Jul 29.
6
Comparison of Reproduction by Meloidogyne graminicola and M. incognita on Trifolium Species.
J Nematol. 1992 Jun;24(2):257-61.
7
A rice root-knot nematode Meloidogyne graminicola-resistant mutant rice line shows early expression of plant-defence genes.
Planta. 2021 Apr 17;253(5):108. doi: 10.1007/s00425-021-03625-0.
8
On the Close Relatedness of Two Rice-Parasitic Root-Knot Nematode Species and the Recent Expansion of in Southeast Asia.
Genes (Basel). 2019 Feb 25;10(2):175. doi: 10.3390/genes10020175.
9
Transcriptomic and histological responses of African rice (Oryza glaberrima) to Meloidogyne graminicola provide new insights into root-knot nematode resistance in monocots.
Ann Bot. 2017 Mar 1;119(5):885-899. doi: 10.1093/aob/mcw256.
10
Proteome-Wide Analyses Provide New Insights into the Compatible Interaction of Rice with the Root-Knot Nematode .
Int J Mol Sci. 2020 Aug 6;21(16):5640. doi: 10.3390/ijms21165640.
引用本文的文献
1
Insights from draft genomes of Heterodera species isolated from field soil samples.
BMC Genomics. 2025 Feb 18;26(1):158. doi: 10.1186/s12864-025-11351-0.
2
Global analysis of neuropeptide receptor conservation across phylum Nematoda.
BMC Biol. 2024 Oct 8;22(1):223. doi: 10.1186/s12915-024-02017-6.
3
The Plant Parasitic Nematodes Database: A Comprehensive Genomic Data Platform for Plant Parasitic Nematode Research.
Int J Mol Sci. 2023 Nov 28;24(23):16841. doi: 10.3390/ijms242316841.
4
Unzipped chromosome-level genomes reveal allopolyploid nematode origin pattern as unreduced gamete hybridization.
Nat Commun. 2023 Nov 7;14(1):7156. doi: 10.1038/s41467-023-42700-w.
5
Phylogenomic Analysis of 155 Helminth Species Reveals Widespread Absence of Oxygen Metabolic Capacity.
Genome Biol Evol. 2023 Aug 1;15(8). doi: 10.1093/gbe/evad135.
6
Biotechnological Tools to Elucidate the Mechanism of Plant and Nematode Interactions.
Plants (Basel). 2023 Jun 20;12(12):2387. doi: 10.3390/plants12122387.
7
Roles of Species-Specific Legumains in Pathogenicity of the Pinewood Nematode .
Int J Mol Sci. 2022 Sep 9;23(18):10437. doi: 10.3390/ijms231810437.
8
Silencing the conserved small nuclear ribonucleoprotein SmD1 target gene alters susceptibility to root-knot nematodes in plants.
Plant Physiol. 2022 Jun 27;189(3):1741-1756. doi: 10.1093/plphys/kiac155.
9
Effectors of Root-Knot Nematodes: An Arsenal for Successful Parasitism.
Front Plant Sci. 2021 Dec 22;12:800030. doi: 10.3389/fpls.2021.800030. eCollection 2021.
10
Identification of individual root-knot nematodes using low coverage long-read sequencing.
PLoS One. 2021 Dec 1;16(12):e0253248. doi: 10.1371/journal.pone.0253248. eCollection 2021.
本文引用的文献
1
Genome Evolution of Plant-Parasitic Nematodes.
Annu Rev Phytopathol. 2017 Aug 4;55:333-354. doi: 10.1146/annurev-phyto-080516-035434. Epub 2017 Jun 7.
2
Redundans: an assembly pipeline for highly heterozygous genomes.
Nucleic Acids Res. 2016 Jul 8;44(12):e113. doi: 10.1093/nar/gkw294. Epub 2016 Apr 29.
3
Meloidogyne graminicola: a major threat to rice agriculture.
Mol Plant Pathol. 2017 Jan;18(1):3-15. doi: 10.1111/mpp.12394. Epub 2016 Jul 1.
4
The complete mitochondrial genome of Meloidogyne graminicola (Tylenchina): a unique gene arrangement and its phylogenetic implications.
PLoS One. 2014 Jun 3;9(6):e98558. doi: 10.1371/journal.pone.0098558. eCollection 2014.
5
Fast assembly of the mitochondrial genome of a plant parasitic nematode (Meloidogyne graminicola) using next generation sequencing.
C R Biol. 2014 May;337(5):295-301. doi: 10.1016/j.crvi.2014.03.003. Epub 2014 Apr 4.
6
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.
Genome Res. 2014 Aug;24(8):1384-95. doi: 10.1101/gr.170720.113. Epub 2014 Apr 22.
7
MITOS: improved de novo metazoan mitochondrial genome annotation.
Mol Phylogenet Evol. 2013 Nov;69(2):313-9. doi: 10.1016/j.ympev.2012.08.023. Epub 2012 Sep 7.
8
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
9
NGS QC Toolkit: a toolkit for quality control of next generation sequencing data.
PLoS One. 2012;7(2):e30619. doi: 10.1371/journal.pone.0030619. Epub 2012 Feb 1.
10
Zotero 插件