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线虫基因组公告：水稻根结线虫基因组草图

Nematode Genome Announcement: A Draft Genome for Rice Root-Knot Nematode, .

作者信息

Somvanshi Vishal Singh, Tathode Madhura, Shukla Rohit Nandan, Rao Uma

机构信息

Division of Nematology, ICAR-Indian Agricultural Research Institute, LBS Center, PUSA Campus, New Delhi 110012, India.

Bionivid Technology Private Limited, 209, 4th Cross, Kasturi Nagar, Bangalore 560043, India.

出版信息

J Nematol. 2018 Sep 3;50(2):111-116. doi: 10.21307/jofnem-2018-018.

DOI:10.21307/jofnem-2018-018
PMID:30451432
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6909324/
Abstract

The rice root-knot nematode Meloidogyne graminicola has emerged as a devastating pest of rice in South-East Asian countries. Here we present a draft genome sequence for M. graminicola , assembled using data from short and long insert libraries sequenced on Illumina GAIIx sequencing platform.

摘要

稻根结线虫（Meloidogyne graminicola）已成为东南亚国家水稻的一种毁灭性害虫。在此，我们展示了稻根结线虫的基因组序列草图，该草图是利用在Illumina GAIIx测序平台上对短插入片段文库和长插入片段文库进行测序得到的数据组装而成的。

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本文引用的文献

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Genome Evolution of Plant-Parasitic Nematodes.植物寄生线虫的基因组进化。
Annu Rev Phytopathol. 2017 Aug 4;55:333-354. doi: 10.1146/annurev-phyto-080516-035434. Epub 2017 Jun 7.
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Redundans: an assembly pipeline for highly heterozygous genomes.Redundans：一种用于高度杂合基因组的组装管道。
Nucleic Acids Res. 2016 Jul 8;44(12):e113. doi: 10.1093/nar/gkw294. Epub 2016 Apr 29.
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Meloidogyne graminicola: a major threat to rice agriculture.禾谷根结线虫：对水稻种植业的重大威胁。
Mol Plant Pathol. 2017 Jan;18(1):3-15. doi: 10.1111/mpp.12394. Epub 2016 Jul 1.
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The complete mitochondrial genome of Meloidogyne graminicola (Tylenchina): a unique gene arrangement and its phylogenetic implications.麦根长足蠕形线虫完整线粒体基因组：独特的基因排列及其系统发育意义。
PLoS One. 2014 Jun 3;9(6):e98558. doi: 10.1371/journal.pone.0098558. eCollection 2014.
5
Fast assembly of the mitochondrial genome of a plant parasitic nematode (Meloidogyne graminicola) using next generation sequencing.利用下一代测序技术快速组装植物寄生线虫（麦根长足蠕孢线虫）的线粒体基因组。
C R Biol. 2014 May;337(5):295-301. doi: 10.1016/j.crvi.2014.03.003. Epub 2014 Apr 4.
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Mol Phylogenet Evol. 2013 Nov;69(2):313-9. doi: 10.1016/j.ympev.2012.08.023. Epub 2012 Sep 7.
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