Institute of Physical and Theoretical Chemistry, University of Bonn, Wegelerstr. 12, 53115, Bonn, Germany.
Kekulé Institute of Organic Chemistry and Biochemistry, Gerhard-Domagk-Str. 1, 53121, Bonn, Germany.
Chemistry. 2019 Feb 18;25(10):2586-2596. doi: 10.1002/chem.201805016. Epub 2019 Jan 21.
Iron(III) porphyrins have the propensity to form μ -oxo-dimers, the structures of which resemble two wheels on an axle. Whereas their crystal structure is known, their solution structure and internal dynamics is not. In the present work, the structure and dynamics of such dimers were studied by means of electron paramagnetic resonance (EPR) spectroscopy and quantum chemistry based molecular dynamics (MD) simulations by using the semiempirical tight-binding method (GFN-xTB). To enable EPR investigation of the dimers, a nitroxide was attached to each of the tetraphenylporphyrin cores through a linear and a bent linker. The inter-nitroxide distance distributions within the dimers were determined by continuous-wave (cw)-EPR and pulsed electron-electron double resonance (PELDOR or DEER) experiments and, with the help of MD, interpreted in terms of the rotation of the porphyrin planes with respect to each other around the Fe-O-Fe axis. It was found that such rotation is restricted to the four registers defined by the phenyl substituents. Within the registers, the rotation angle swings between 30° and 60° in the proximal and between 125° and 145° in the distal register. With EPR, all four angles were found to be equally populated, whereas the 30° and 145° angles are strongly favored to the expense of the 60° and 125° angles in the MD simulation. In either case, the internal dynamics of these dimers thus resemble the motion of a step motor.
铁(III)卟啉具有形成μ-氧二聚体的倾向,其结构类似于轴上的两个轮子。虽然它们的晶体结构是已知的,但它们的溶液结构和内部动力学尚不清楚。在本工作中,通过电子顺磁共振(EPR)光谱和基于量子化学的分子动力学(MD)模拟,使用半经验紧束缚方法(GFN-xTB)研究了这种二聚体的结构和动力学。为了能够进行二聚体的 EPR 研究,通过线性和弯曲接头将一个氮氧自由基分别连接到每个四苯基卟啉核心上。通过连续波(cw)-EPR 和脉冲电子-电子双共振(PELDOR 或 DEER)实验确定了二聚体内部的氮氧自由基间距离分布,并借助 MD,根据卟啉平面相对于彼此围绕 Fe-O-Fe 轴的旋转来解释。结果发现,这种旋转仅限于由苯基取代基定义的四个寄存器。在寄存器内,旋转角度在近端之间在 30°和 60°之间摆动,在远端寄存器之间在 125°和 145°之间摆动。通过 EPR 发现,所有四个角度的占有率相等,而在 MD 模拟中,30°和 145°的角度强烈有利于 60°和 125°的角度。在这两种情况下,这些二聚体的内部动力学都类似于步进电机的运动。