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利什曼原虫药物靶点鉴定的计算机模拟方法:消减基因组和代谢模拟分析

An in silico approach in identification of drug targets in Leishmania: A subtractive genomic and metabolic simulation analysis.

作者信息

Meshram Rohan J, Goundge Mayuri B, Kolte Baban S, Gacche Rajesh N

机构信息

Bioinformatics Centre, Savitribai Phule Pune University, Pune 411007, India.

Bioinformatics Centre, Savitribai Phule Pune University, Pune 411007, India.

出版信息

Parasitol Int. 2019 Apr;69:59-70. doi: 10.1016/j.parint.2018.11.006. Epub 2018 Nov 29.

DOI:10.1016/j.parint.2018.11.006
PMID:30503238
Abstract

Leishmaniasis is one of the major health issue in developing countries. The current therapeutic regimen for this disease is less effective with lot of adverse effects thereby warranting an urgent need to develop not only new and selective drug candidates but also identification of effective drug targets. Here we present subtractive genomics procedure for identification of putative drug targets in Leishmania. Comprehensive druggability analysis has been carried out in the current work for identified metabolic pathways and drug targets. We also demonstrate effective metabolic simulation methodology to pinpoint putative drug targets in threonine biosynthesis pathway. Metabolic simulation data from the current study indicate that decreasing flux through homoserine kinase reaction can be considered as a good therapeutic opportunity. The data from current study is expected to show new avenue for designing experimental strategies in search of anti-leishmanial agents.

摘要

利什曼病是发展中国家的主要健康问题之一。目前针对该疾病的治疗方案效果欠佳且有诸多不良反应,因此迫切需要研发不仅新的且具选择性的候选药物,还要鉴定有效的药物靶点。在此,我们展示了用于鉴定利什曼原虫中假定药物靶点的消减基因组学方法。在当前工作中,已对鉴定出的代谢途径和药物靶点进行了全面的药物可及性分析。我们还展示了有效的代谢模拟方法,以确定苏氨酸生物合成途径中的假定药物靶点。当前研究的代谢模拟数据表明,降低高丝氨酸激酶反应的通量可被视为一个良好的治疗契机。预计当前研究的数据将为设计寻找抗利什曼病药物的实验策略开辟新途径。

相似文献

1
An in silico approach in identification of drug targets in Leishmania: A subtractive genomic and metabolic simulation analysis.利什曼原虫药物靶点鉴定的计算机模拟方法:消减基因组和代谢模拟分析
Parasitol Int. 2019 Apr;69:59-70. doi: 10.1016/j.parint.2018.11.006. Epub 2018 Nov 29.
2
Integrated subtractive genomics and structure-based approach to unravel the therapeutic drug target of Leishmania species.综合消减基因组学和基于结构的方法揭示利什曼原虫属的治疗药物靶点。
Arch Microbiol. 2024 Sep 19;206(10):408. doi: 10.1007/s00203-024-04118-w.
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Protease inhibitors in potential drug development for Leishmaniasis.用于利什曼病潜在药物开发的蛋白酶抑制剂
Indian J Biochem Biophys. 2013 Oct;50(5):363-76.
4
Glycobiology of the Leishmania parasite and emerging targets for antileishmanial drug discovery.利什曼原虫的糖生物学和新兴的抗利什曼原虫药物发现靶点。
Expert Opin Ther Targets. 2010 Jul;14(7):739-57. doi: 10.1517/14728222.2010.495125.
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High-throughput prioritization of target proteins for development of new antileishmanial compounds.用于开发新型抗利什曼原虫化合物的靶蛋白高通量优先级排序
Int J Parasitol Drugs Drug Resist. 2024 Aug;25:100538. doi: 10.1016/j.ijpddr.2024.100538. Epub 2024 Apr 16.
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Nuclear DNA replication and repair in parasites of the genus Leishmania: Exploiting differences to develop innovative therapeutic approaches.利什曼原虫属寄生虫的核 DNA 复制和修复:利用差异开发创新的治疗方法。
Crit Rev Microbiol. 2017 Mar;43(2):156-177. doi: 10.1080/1040841X.2016.1188758. Epub 2016 Dec 14.
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Auranofin is an apoptosis-simulating agent with in vitro and in vivo anti-leishmanial activity.金诺芬是一种模拟细胞凋亡的药物,具有体外和体内抗利什曼原虫活性。
ACS Chem Biol. 2014 Mar 21;9(3):663-72. doi: 10.1021/cb400800q. Epub 2013 Dec 23.
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Emerging therapeutic targets for treatment of leishmaniasis.治疗利什曼病的新兴治疗靶点。
Expert Opin Ther Targets. 2018 Jun;22(6):467-486. doi: 10.1080/14728222.2018.1472241. Epub 2018 May 9.
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Drug search for leishmaniasis: a virtual screening approach by grid computing.用于利什曼病的药物搜索:通过网格计算的虚拟筛选方法。
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Leishmaniasis drug discovery: recent progress and challenges in assay development.利什曼病药物发现:检测方法开发的最新进展和挑战。
Drug Discov Today. 2017 Oct;22(10):1516-1531. doi: 10.1016/j.drudis.2017.06.004. Epub 2017 Jun 21.

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Modeling and simulation study to identify threonine synthase as possible drug target in Leishmania major.建立模型并进行模拟研究,以鉴定亮氨酸合成酶为利什曼原虫的潜在药物靶点。
Mol Divers. 2021 Aug;25(3):1679-1700. doi: 10.1007/s11030-020-10129-8. Epub 2020 Jul 31.
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Metabolic Pathway Analysis Identifying Target Against Leishmaniasis - A Kinetic Modeling Approach.代谢途径分析确定抗利什曼病靶点——一种动力学建模方法。
Front Genet. 2020 Mar 6;11:179. doi: 10.3389/fgene.2020.00179. eCollection 2020.