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感染烟草花叶病毒的烟草植株的比较蛋白质组学鉴定了参与光合作用和植物防御的主要宿主蛋白。

Comparative proteomics of Tobacco mosaic virus-infected Nicotiana tabacum plants identified major host proteins involved in photosystems and plant defence.

机构信息

Department of Biological Sciences, National University of Singapore (NUS), 14 Science Drive 4, 117543, Singapore.

Department of Biological Sciences, National University of Singapore (NUS), 14 Science Drive 4, 117543, Singapore; Temasek Life Sciences Laboratory, 1 Research Link, 117604, Singapore; National University of Singapore Suzhou Research Institute, Suzhou, Jiangsu 215123, China.

出版信息

J Proteomics. 2019 Mar 1;194:191-199. doi: 10.1016/j.jprot.2018.11.018. Epub 2018 Nov 29.

Abstract

Tobacco mosaic virus (TMV) is a positive single-stranded RNA virus. Its 5' end ORF codes for the replicase proteins, namely 126 kDa and 183 kDa, respectively. These proteins interact with many host proteins to form a virus replication complex (VRC). This study aims to dissect the proteome profile of TMV-infected Nicotiana tabacum in host cellular and molecular pathways. We used the isobaric tags for relative and absolute quantification (iTRAQ) technique to analyse the differential global proteomic profile of TMV infected and mock infected plants. Out of 1897 total proteins, we identified 407 differentially abundant proteins and grouped them into three functional categories, namely metabolism, cellular processes and signalling processing. Our results showed that photosynthesis, carbon metabolism, plant defence, protein synthesis, and protein processing in the endoplasmic reticulum were significantly altered. Carbon metabolism and photosynthesis were present in very low abundance, whereas accumulation of reactive oxygen species and misfolded proteins lead to the accumulation of thioredoxin H-type 1. In conclusion, we identified several key host proteins that are involved in TMV infection/replication in N. tabacum plants. SIGNIFICANCE OF THE STUDY: TMV is one of the most widely studied plant virus. It is used as a tool to study host-virus interaction. There are several host proteins reported that facilitate VRC formation and replication of TMV. However, there is limited knowledge in the expression regulation of these host proteins upon TMV infection. This study is the first report that investigates the response of host protein expression involved in TMV infection through a quantitative proteomics technique iTRAQ, combined with LC-MS/MS analysis. We used TMV-infected Nicotiana tabacum plants to investigate the effects of TMV infection on host proteins. Our results revealed differential abundance of proteins involving various pathways in protein translation, protein processing, photosynthesis and plant defence. There was a high abundance of thioredoxin H-type 1, a protein that counters oxidative stress and accelerated regulation of fatty acid synthesis to provide additional lipid molecules for VRC formation. There was a significant reduction in abundance of psaA and psbB proteins in the photosynthetic pathways. Our results identified key candidate host proteins involved in TMV-infected N. tabacum for functional studies in future.

摘要

烟草花叶病毒(TMV)是一种正链单链 RNA 病毒。其 5'端 ORF 编码复制酶蛋白,分别为 126 kDa 和 183 kDa。这些蛋白与许多宿主蛋白相互作用形成病毒复制复合物(VRC)。本研究旨在剖析 TMV 感染烟草细胞在分子和细胞水平上的蛋白质组谱。我们使用同位素相对和绝对定量(iTRAQ)技术分析 TMV 感染和Mock 感染植物的全蛋白质组差异。在 1897 种总蛋白中,我们鉴定出 407 种差异丰度蛋白,并将其分为 3 个功能类别,即代谢、细胞过程和信号处理。结果表明,光合作用、碳代谢、植物防御、蛋白质合成和内质网中的蛋白质加工受到显著影响。碳代谢和光合作用的丰度非常低,而活性氧和错误折叠蛋白的积累导致硫氧还蛋白 H 型 1 的积累。总之,我们鉴定了几种关键的宿主蛋白,这些蛋白参与了 TMV 在烟草中的感染/复制。研究意义:TMV 是研究最广泛的植物病毒之一。它被用作研究宿主-病毒相互作用的工具。有报道称,有几种宿主蛋白促进 VRC 的形成和 TMV 的复制。然而,对于这些宿主蛋白在 TMV 感染后的表达调控知之甚少。本研究首次采用 iTRAQ 联合 LC-MS/MS 分析的定量蛋白质组学技术,研究 TMV 感染宿主蛋白表达的调控。我们使用 TMV 感染的烟草植物来研究 TMV 感染对宿主蛋白的影响。结果显示,涉及蛋白质翻译、蛋白质加工、光合作用和植物防御等多种途径的宿主蛋白丰度发生了差异。硫氧还蛋白 H 型 1 的丰度很高,该蛋白可对抗氧化应激并加速脂肪酸合成的调节,为 VRC 的形成提供额外的脂质分子。光合作用途径中的 psaA 和 psbB 蛋白丰度显著降低。我们的研究结果确定了烟草感染 TMV 中涉及的关键候选宿主蛋白,为今后的功能研究提供了依据。

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