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脐带血浆 microRNAs 的 RNA 测序分析。

RNA-sequencing analysis of umbilical cord plasma microRNAs from healthy newborns.

机构信息

Department of Physiology & Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland.

FutureNeuro Research Centre, Royal College of Surgeons in Ireland, Dublin, Ireland.

出版信息

PLoS One. 2018 Dec 3;13(12):e0207952. doi: 10.1371/journal.pone.0207952. eCollection 2018.

Abstract

MicroRNAs are a class of small non-coding RNA that regulate gene expression at a post-transcriptional level. MicroRNAs have been identified in various body fluids under normal conditions and their stability as well as their dysregulation in disease has led to ongoing interest in their diagnostic and prognostic potential. Circulating microRNAs may be valuable predictors of early-life complications such as birth asphyxia or neonatal seizures but there are relatively few data on microRNA content in plasma from healthy babies. Here we performed small RNA-sequencing analysis of plasma processed from umbilical cord blood in a set of healthy newborns. MicroRNA levels in umbilical cord plasma of four male and four female healthy babies, from two different centres were profiled. A total of 1,004 individual microRNAs were identified, which ranged from 426 to 659 per sample, of which 269 microRNAs were common to all eight samples. Many of these microRNAs are highly expressed and consistent with previous studies using other high throughput platforms. While overall microRNA expression did not differ between male and female cord blood plasma, we did detect differentially edited microRNAs in female plasma compared to male. Of note, and consistent with other studies of this type, adenylation and uridylation were the two most prominent forms of editing. Six microRNAs, miR-128-3p, miR-29a-3p, miR-9-5p, miR-218-5p, 204-5p and miR-132-3p were consistently both uridylated and adenylated in female cord blood plasma. These results provide a benchmark for microRNA profiling and biomarker discovery using umbilical cord plasma and can be used as comparative data for future biomarker profiles from complicated births or those with early-life developmental disorders.

摘要

微小 RNA 是一类小的非编码 RNA,可在转录后水平调节基因表达。微小 RNA 在正常情况下的各种体液中都有被发现,其在疾病中的稳定性和失调导致了人们对其诊断和预后潜力的持续关注。循环微小 RNA 可能是出生窒息或新生儿癫痫等早期生命并发症的有价值预测指标,但关于健康婴儿血浆中微小 RNA 含量的数据相对较少。在这里,我们对一组健康新生儿的脐带血进行了血浆小 RNA 测序分析。对来自两个不同中心的 4 名男性和 4 名女性健康婴儿的脐带血浆中的 microRNA 水平进行了分析。总共鉴定出 1004 个个体 microRNA,每个样本的范围为 426 到 659 个,其中 269 个 microRNA 存在于所有 8 个样本中。这些 microRNA 中有许多高度表达,与使用其他高通量平台进行的先前研究一致。虽然男性和女性脐带血浆中的整体 microRNA 表达没有差异,但我们确实检测到女性血浆中的 microRNA 编辑存在差异。值得注意的是,与这种类型的其他研究一致,腺苷酸化和尿苷酸化是两种最突出的编辑形式。在女性脐带血浆中,有 6 个 microRNA,miR-128-3p、miR-29a-3p、miR-9-5p、miR-218-5p、204-5p 和 miR-132-3p 被一致地腺苷酸化和尿苷酸化。这些结果为使用脐带血浆进行 microRNA 图谱分析和生物标志物发现提供了基准,并可作为复杂分娩或早期生命发育障碍的未来生物标志物图谱的比较数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c689/6277075/bf45397999a1/pone.0207952.g001.jpg

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