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马里亚纳海沟(海星纲:平腕海星目:平腕海星科)的首个完整线粒体基因组有助于深入了解平腕海星目的深海适应性进化。

The first complete mitochondrial genome of the Mariana Trench (Asteroidea: Brisingida: Brisingidae) allows insights into the deep-sea adaptive evolution of Brisingida.

作者信息

Mu Wendan, Liu Jun, Zhang Haibin

机构信息

Institute of Deep-Sea Science and Engineering Chinese Academy of Sciences Sanya China.

University of Chinese Academy of Sciences Beijing China.

出版信息

Ecol Evol. 2018 Oct 31;8(22):10673-10686. doi: 10.1002/ece3.4427. eCollection 2018 Nov.

Abstract

Starfish (phylum Echinodermata) are ecologically important and diverse members of marine ecosystems in all of the world's oceans, from the shallow water to the hadal zone. The deep sea is recognized as an extremely harsh environment on earth. In this study, we present the mitochondrial genome sequence of Mariana Trench starfish , and this study is the first to explore in detail the mitochondrial genome of a deep-sea member of the order Brisingida. Similar to other starfish, it contained 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes (duplication of two tRNAs: and ). Twenty-two of these genes are encoded on the positive strand, while the other 15 are encoded on the negative strand. The gene arrangement was identical to those of sequenced starfish. Phylogenetic analysis showed the deep-sea Brisingida as a sister taxon to the traditional members of the Asteriidae. Positive selection analysis indicated that five residues (8 N and 16 I in , 47 D and 196 V in , 599 N in ) were positively selected sites with high posterior probabilities. Compared these features with shallow sea starfish, we predict that variation specifically in , , and may play an important role in 's adaptation to deep-sea environment.

摘要

海星(棘皮动物门)是世界各大洋海洋生态系统中具有重要生态意义且种类多样的成员,分布于从浅水区域到超深渊带的各个海域。深海被认为是地球上极其恶劣的环境。在本研究中,我们展示了马里亚纳海沟海星的线粒体基因组序列,并且本研究首次详细探究了柱体海星目深海成员的线粒体基因组。与其他海星类似,它包含13个蛋白质编码基因、两个核糖体RNA基因和22个转运RNA基因(两个tRNA存在重复: 和 )。其中22个基因在正链上编码,另外15个在负链上编码。基因排列与已测序海星的基因排列相同。系统发育分析表明,深海柱体海星目是海盘车科传统成员的姐妹分类群。正选择分析表明,五个残基( 中的8位N和16位I、 中的47位D和196位V、 中的599位N)是后验概率较高的正选择位点。将这些特征与浅海海星进行比较,我们预测,特别是在 、 和 中的变异可能在 适应深海环境中发挥重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f8e/6262923/6f5da53df9e2/ECE3-8-10673-g001.jpg

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