• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

具有不同产氢能力的嗜热葡糖苷芽孢杆菌菌株的比较基因组分析。

Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities.

作者信息

Mohr Teresa, Aliyu Habibu, Küchlin Raphael, Zwick Michaela, Cowan Don, Neumann Anke, de Maayer Pieter

机构信息

Section II: Technical Biology, Institute of Process engineering in Life Science, Karlsruhe Institute of Technology, Kaiserstrasse 12, 76131, Karlsruhe, Germany.

Centre for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Hatfield, Pretoria, 0028, South Africa.

出版信息

BMC Genomics. 2018 Dec 6;19(1):880. doi: 10.1186/s12864-018-5302-9.

DOI:10.1186/s12864-018-5302-9
PMID:30522433
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6282330/
Abstract

BACKGROUND

The facultatively anaerobic thermophile Parageobacillus thermoglucosidasius produces hydrogen gas (H) by coupling CO oxidation to proton reduction in the water-gas shift (WGS) reaction via a carbon monoxide dehydrogenase-hydrogenase enzyme complex. Although little is known about the hydrogenogenic capacities of different strains of this species, these organisms offer a potentially viable process for the synthesis of this alternative energy source.

RESULTS

The WGS-catalyzed H production capacities of four distinct P. thermoglucosidasius strains were determined by cultivation and gas analysis. Three strains (DSM 2542, DSM 2543 and DSM 6285) were hydrogenogenic, while the fourth strain (DSM 21625) was not. Furthermore, in one strain (DSM 6285) H production commenced earlier in the cultivation than the other hydrogenogenic strains. Comparative genomic analysis of the four strains identified extensive differences in the protein complement encoded on the genomes, some of which are postulated to contribute to the different hydrogenogenic capacities of the strains. Furthermore, polymorphisms and deletions in the CODH-NiFe hydrogenase loci may also contribute towards this variable phenotype.

CONCLUSIONS

Disparities in the hydrogenogenic capacities of different P. thermoglucosidasius strains were identified, which may be correlated to variability in their global proteomes and genetic differences in their CODH-NiFe hydrogenase loci. The data from this study may contribute towards an improved understanding of WGS-catalysed hydrogenogenesis by P. thermoglucosidasius.

摘要

背景

兼性厌氧嗜热菌嗜热葡糖苷芽孢杆菌通过一氧化碳脱氢酶-氢化酶酶复合物,在水煤气变换(WGS)反应中将CO氧化与质子还原偶联,从而产生氢气(H₂)。尽管对于该物种不同菌株的产氢能力了解甚少,但这些微生物为这种替代能源的合成提供了一种潜在可行的方法。

结果

通过培养和气体分析确定了四种不同的嗜热葡糖苷芽孢杆菌菌株的WGS催化产氢能力。三株菌株(DSM 2542、DSM 2543和DSM 6285)具有产氢能力,而第四株菌株(DSM 21625)则不具备。此外,在一株菌株(DSM 6285)中,产氢在培养过程中比其他产氢菌株开始得更早。对这四株菌株的比较基因组分析发现,基因组编码的蛋白质互补物存在广泛差异,其中一些差异被认为导致了菌株产氢能力的不同。此外,CODH-NiFe氢化酶基因座的多态性和缺失也可能导致这种可变表型。

结论

确定了不同嗜热葡糖苷芽孢杆菌菌株产氢能力的差异,这可能与其整体蛋白质组的变异性以及CODH-NiFe氢化酶基因座的遗传差异相关。本研究的数据可能有助于更好地理解嗜热葡糖苷芽孢杆菌催化的WGS产氢过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a183/6282330/5a9558f9e7e1/12864_2018_5302_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a183/6282330/ec7b400ab70b/12864_2018_5302_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a183/6282330/7a518ababddc/12864_2018_5302_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a183/6282330/56f04a0d20d2/12864_2018_5302_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a183/6282330/cea1b5c4ec6d/12864_2018_5302_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a183/6282330/5a9558f9e7e1/12864_2018_5302_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a183/6282330/ec7b400ab70b/12864_2018_5302_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a183/6282330/7a518ababddc/12864_2018_5302_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a183/6282330/56f04a0d20d2/12864_2018_5302_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a183/6282330/cea1b5c4ec6d/12864_2018_5302_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a183/6282330/5a9558f9e7e1/12864_2018_5302_Fig5_HTML.jpg

相似文献

1
Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities.具有不同产氢能力的嗜热葡糖苷芽孢杆菌菌株的比较基因组分析。
BMC Genomics. 2018 Dec 6;19(1):880. doi: 10.1186/s12864-018-5302-9.
2
CO-dependent hydrogen production by the facultative anaerobe Parageobacillus thermoglucosidasius.兼性厌氧菌嗜热葡糖酸芽胞杆菌的 CO 依赖型产氢。
Microb Cell Fact. 2018 Jul 9;17(1):108. doi: 10.1186/s12934-018-0954-3.
3
The effects of synthesis gas feedstocks and oxygen perturbation on hydrogen production by Parageobacillus thermoglucosidasius.合成气原料和氧气扰动对嗜热葡糖苷芽孢杆菌产氢的影响。
Microb Cell Fact. 2024 May 2;23(1):125. doi: 10.1186/s12934-024-02391-4.
4
Insight into Energy Conservation via Alternative Carbon Monoxide Metabolism in Carboxydothermus pertinax Revealed by Comparative Genome Analysis.通过比较基因组分析揭示羧菌热醋穆尔氏菌中通过替代一氧化碳代谢进行节能的深入了解。
Appl Environ Microbiol. 2018 Jul 2;84(14). doi: 10.1128/AEM.00458-18. Print 2018 Jul 15.
5
Genetic Engineering of Carbon Monoxide-dependent Hydrogen-producing Machinery in Parageobacillus thermoglucosidasius.产热解糖梭菌中一氧化碳依赖型产氢机器的遗传工程。
Microbes Environ. 2020;35(4). doi: 10.1264/jsme2.ME20101.
6
Time-Course Transcriptome of DSM 6285 Grown in the Presence of Carbon Monoxide and Air.在一氧化碳和空气存在的条件下培养 DSM 6285 的时间进程转录组。
Int J Mol Sci. 2020 May 29;21(11):3870. doi: 10.3390/ijms21113870.
7
Not All That Glitters Is Gold: The Paradox of CO-dependent Hydrogenogenesis in .并非所有闪光的都是金子:[具体领域]中辅酶依赖性产氢的悖论
Front Microbiol. 2021 Dec 9;12:784652. doi: 10.3389/fmicb.2021.784652. eCollection 2021.
8
Isolation, Genomic Sequence and Physiological Characterization of sp. G301, an Isolate Capable of Both Hydrogenogenic and Aerobic Carbon Monoxide Oxidation.一株同时具备产氢和好氧氧化一氧化碳能力的 sp. G301 的分离、基因组序列和生理特性研究。
Appl Environ Microbiol. 2023 Jun 28;89(6):e0018523. doi: 10.1128/aem.00185-23. Epub 2023 May 23.
9
The first crenarchaeon capable of growth by anaerobic carbon monoxide oxidation coupled with H production.首例能够通过厌氧一氧化碳氧化耦合产氢进行生长的泉古菌。
Syst Appl Microbiol. 2020 Mar;43(2):126064. doi: 10.1016/j.syapm.2020.126064. Epub 2020 Jan 25.
10
Draft genome of a member of hydrogenogenic carbon monoxide utilizers, isolated from a freshwater lake sediment.从淡水湖沉积物中分离出的产氢一氧化碳利用菌成员的基因组草图。
Microbiol Resour Announc. 2024 Feb 15;13(2):e0079523. doi: 10.1128/mra.00795-23. Epub 2024 Jan 17.

引用本文的文献

1
Effects of Nitrate on Hydrogenogenic Carbon Monoxide Oxidation in Parageobacillus thermoglucosidasius.硝酸盐对嗜热葡萄糖苷芽孢杆菌中一氧化碳产氢氧化的影响
Environ Microbiol Rep. 2025 Jun;17(3):e70133. doi: 10.1111/1758-2229.70133.
2
Batch and semi-continuous fermentation with Parageobacillus thermoglucosidasius DSM 6285 for H production.使用嗜热葡糖苷芽孢杆菌DSM 6285进行分批和半连续发酵以生产H。
Biotechnol Biofuels Bioprod. 2025 Jan 9;18(1):3. doi: 10.1186/s13068-024-02597-z.
3
The effects of synthesis gas feedstocks and oxygen perturbation on hydrogen production by Parageobacillus thermoglucosidasius.

本文引用的文献

1
CO-dependent hydrogen production by the facultative anaerobe Parageobacillus thermoglucosidasius.兼性厌氧菌嗜热葡糖酸芽胞杆菌的 CO 依赖型产氢。
Microb Cell Fact. 2018 Jul 9;17(1):108. doi: 10.1186/s12934-018-0954-3.
2
CSAR: a contig scaffolding tool using algebraic rearrangements.CSAR:一种使用代数重排进行拼接的工具。
Bioinformatics. 2018 Jan 1;34(1):109-111. doi: 10.1093/bioinformatics/btx543.
3
Identification and sequence analyses of novel lipase encoding novel thermophillic bacilli isolated from Armenian geothermal springs.
合成气原料和氧气扰动对嗜热葡糖苷芽孢杆菌产氢的影响。
Microb Cell Fact. 2024 May 2;23(1):125. doi: 10.1186/s12934-024-02391-4.
4
Isolation, Genomic Sequence and Physiological Characterization of sp. G301, an Isolate Capable of Both Hydrogenogenic and Aerobic Carbon Monoxide Oxidation.一株同时具备产氢和好氧氧化一氧化碳能力的 sp. G301 的分离、基因组序列和生理特性研究。
Appl Environ Microbiol. 2023 Jun 28;89(6):e0018523. doi: 10.1128/aem.00185-23. Epub 2023 May 23.
5
Not All That Glitters Is Gold: The Paradox of CO-dependent Hydrogenogenesis in .并非所有闪光的都是金子:[具体领域]中辅酶依赖性产氢的悖论
Front Microbiol. 2021 Dec 9;12:784652. doi: 10.3389/fmicb.2021.784652. eCollection 2021.
6
Carbon Monoxide Induced Metabolic Shift in the Carboxydotrophic DSM 6285.一氧化碳诱导嗜一氧化碳菌DSM 6285中的代谢转变。
Microorganisms. 2021 May 19;9(5):1090. doi: 10.3390/microorganisms9051090.
7
Genetic Engineering of Carbon Monoxide-dependent Hydrogen-producing Machinery in Parageobacillus thermoglucosidasius.产热解糖梭菌中一氧化碳依赖型产氢机器的遗传工程。
Microbes Environ. 2020;35(4). doi: 10.1264/jsme2.ME20101.
8
Scientific Opinion on the update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA (2017-2019).关于向欧洲食品安全局通报的(2017 - 2019年)有意添加到食品或饲料中的QPS推荐生物制剂清单更新的科学意见。
EFSA J. 2020 Feb 3;18(2):e05966. doi: 10.2903/j.efsa.2020.5966. eCollection 2020 Feb.
9
Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 11: suitability of taxonomic units notified to EFSA until September 2019.向欧洲食品安全局(EFSA)通报的有意添加到食品或饲料中的QPS推荐生物制剂清单更新11:截至2019年9月向EFSA通报的分类单元的适用性
EFSA J. 2020 Feb 3;18(2):e05965. doi: 10.2903/j.efsa.2020.5965. eCollection 2020 Feb.
10
Activation of a [NiFe]-hydrogenase-4 isoenzyme by maturation proteases.成熟蛋白酶对[NiFe]-氢化酶-4同工酶的激活。
Microbiology (Reading). 2020 Sep;166(9):854-860. doi: 10.1099/mic.0.000963.
从亚美尼亚地热泉中分离出的新型嗜热芽孢杆菌的新型脂肪酶编码基因的鉴定及序列分析。
BMC Microbiol. 2017 May 2;17(1):103. doi: 10.1186/s12866-017-1016-4.
4
Phylogenomic re-assessment of the thermophilic genus Geobacillus.嗜热栖热放线菌属的系统基因组学重新评估
Syst Appl Microbiol. 2016 Dec;39(8):527-533. doi: 10.1016/j.syapm.2016.09.004. Epub 2016 Oct 4.
5
Purification and Characterization of a New Thermostable, Haloalkaline, Solvent Stable, and Detergent Compatible Serine Protease from Geobacillus toebii Strain LBT 77.来自嗜热栖热放线菌LBT 77菌株的新型热稳定、嗜盐碱性、耐溶剂且与洗涤剂兼容的丝氨酸蛋白酶的纯化与特性分析
Biomed Res Int. 2016;2016:9178962. doi: 10.1155/2016/9178962. Epub 2016 Mar 16.
6
OrthoANI: An improved algorithm and software for calculating average nucleotide identity.OrthoANI:一种用于计算平均核苷酸一致性的改进算法及软件。
Int J Syst Evol Microbiol. 2016 Feb;66(2):1100-1103. doi: 10.1099/ijsem.0.000760. Epub 2015 Nov 9.
7
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.蛋nog 4.5:一个具有改进功能注释的层次同源框架,适用于真核、原核和病毒序列。
Nucleic Acids Res. 2016 Jan 4;44(D1):D286-93. doi: 10.1093/nar/gkv1248. Epub 2015 Nov 17.
8
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy.OrthoFinder:解决全基因组比较中的基本偏差可显著提高直系同源组推断准确性。
Genome Biol. 2015 Aug 6;16(1):157. doi: 10.1186/s13059-015-0721-2.
9
The genus Geobacillus and their biotechnological potential.嗜热栖热菌属及其生物技术潜力。
Adv Appl Microbiol. 2015;92:1-48. doi: 10.1016/bs.aambs.2015.03.001. Epub 2015 May 5.
10
MeDuSa: a multi-draft based scaffolder.美杜莎:一种基于多草稿的支架构建工具。
Bioinformatics. 2015 Aug 1;31(15):2443-51. doi: 10.1093/bioinformatics/btv171. Epub 2015 Mar 25.