从伊比利亚黄铁矿带地下538.5米深处分离出的菌株T2.30D-1.1的基因组草图序列
Draft Genome Sequence of sp. Strain T2.30D-1.1, Isolated from 538.5 Meters Deep on the Subsurface of the Iberian Pyrite Belt.
作者信息
García R, Martínez José M, Leandro T, Amils R
机构信息
Centro de Biología Molecular Severo Ochoa (CBMSO, CSIC-UAM), Universidad Autónoma de Madrid, Cantoblanco, Madrid, Spain.
Centre for Neuroscience and Cell Biology, University of Coimbra, Coimbra, Portugal.
出版信息
Microbiol Resour Announc. 2018 Oct 25;7(16). doi: 10.1128/MRA.01098-18. eCollection 2018 Oct.
Abstract
sp. strain T2.30D-1.1 was isolated from the deep subsurface of the Iberian Pyrite Belt. We report its draft genome, consisting of 60 contigs with a chromosome of ≈4.6 Mb and a plasmid of 179 kb. The annotation revealed 4,526 coding DNA sequences, 45 tRNA genes, and 1 rRNA operon.
摘要
菌株T2.30D-1.1是从伊比利亚黄铁矿带的深部地下环境中分离得到的。我们报告了其草图基因组，由60个重叠群组成，其中有一条约4.6 Mb的染色体和一个179 kb的质粒。注释显示有4526个编码DNA序列、45个tRNA基因和1个rRNA操纵子。
相似文献
1
Draft Genome Sequence of sp. Strain T2.30D-1.1, Isolated from 538.5 Meters Deep on the Subsurface of the Iberian Pyrite Belt.从伊比利亚黄铁矿带地下538.5米深处分离出的菌株T2.30D-1.1的基因组草图序列
Microbiol Resour Announc. 2018 Oct 25;7(16). doi: 10.1128/MRA.01098-18. eCollection 2018 Oct.
2
Draft Genome Sequence of sp. Strain T2.26MG-98, Isolated from 492.6 Meters Deep on the Subsurface of the Iberian Pyrite Belt.从伊比利亚黄铁矿带地下492.6米深处分离出的sp. 菌株T2.26MG-98的基因组序列草图
Microbiol Resour Announc. 2019 Apr 18;8(16):e00070-19. doi: 10.1128/MRA.00070-19.
3
Draft Genome Sequence of sp. Strain T2.3D-1.1, Isolated from 121.8 Meters Deep in the Subsurface of the Iberian Pyrite Belt.从伊比利亚黄铁矿带地下121.8米深处分离出的T2.3D-1.1菌株的基因组草图序列
Microbiol Resour Announc. 2020 Oct 1;9(40):e00190-20. doi: 10.1128/MRA.00190-20.
4
Draft genome sequence of the deep-subsurface sp. strain T2.26MG-112.2, a second Rhizobiaceae isolated from the Iberian Pyrite Belt at 492.6 mbs.深部地下sp.菌株T2.26MG - 112.2的基因组序列草图，该菌株是从伊比利亚黄铁矿带492.6米深处分离出的第二种根瘤菌科细菌。
Microbiol Resour Announc. 2024 May 9;13(5):e0050223. doi: 10.1128/mra.00502-23. Epub 2024 Apr 2.
5
Draft Genome Sequence of sp. Strain T2.31D-1, Isolated from a Drilling Core Sample Obtained 414 Meters below Surface in the Iberian Pyrite Belt.从伊比利亚黄铁矿带地表以下414米处获取的钻孔岩芯样本中分离出的T2.31D-1菌株的基因组草图序列
Microbiol Resour Announc. 2021 Jan 7;10(1):e01165-20. doi: 10.1128/MRA.01165-20.
6
Draft Genome Sequence of sp. Strain T2.26MG-97, Isolated from a Rock Core Sample from 492.6 Meters Deep on the Subsurface of the Iberian Pyrite Belt.从伊比利亚黄铁矿带地下492.6米深处的岩芯样本中分离出的菌株T2.26MG-97的基因组草图序列
Microbiol Resour Announc. 2019 Aug 8;8(32):e00375-19. doi: 10.1128/MRA.00375-19.
7
Draft Genome Sequence of the Deep-Subsurface Actinobacterium Tessaracoccus lapidicaptus IPBSL-7T.深部地下放线菌宝石球囊菌IPBSL-7T的基因组草图序列
Genome Announc. 2016 Sep 29;4(5):e01078-16. doi: 10.1128/genomeA.01078-16.
8
Complete Genome Sequence of sp. Strain T2.5-30 Isolated from 139.5 Meters Deep on the Subsurface of the Iberian Pyritic Belt.从伊比利亚黄铁矿带地下139.5米深处分离出的菌株T2.5 - 30的全基因组序列
Genome Announc. 2017 Apr 27;5(17):e00238-17. doi: 10.1128/genomeA.00238-17.
9
sp. T2.3D-1.1 a Novel Microorganism Sustaining the Iron Cycle in the Deep Subsurface of the Iberian Pyrite Belt.种T2.3D - 1.1：一种维持伊比利亚黄铁矿带深部地下铁循环的新型微生物。
Microorganisms. 2022 Aug 6;10(8):1585. doi: 10.3390/microorganisms10081585.
10
Vitamin B Auxotrophy in Isolates from the Deep Subsurface of the Iberian Pyrite Belt.在伊比利亚黄铁矿带深部分离株中发现维生素 B 营养缺陷型。
Genes (Basel). 2023 Jun 26;14(7):1339. doi: 10.3390/genes14071339.
引用本文的文献
1
Draft genome sequence of the deep-subsurface sp. strain T2.26MG-112.2, a second Rhizobiaceae isolated from the Iberian Pyrite Belt at 492.6 mbs.深部地下sp.菌株T2.26MG - 112.2的基因组序列草图，该菌株是从伊比利亚黄铁矿带492.6米深处分离出的第二种根瘤菌科细菌。
Microbiol Resour Announc. 2024 May 9;13(5):e0050223. doi: 10.1128/mra.00502-23. Epub 2024 Apr 2.
2
Vitamin B Auxotrophy in Isolates from the Deep Subsurface of the Iberian Pyrite Belt.在伊比利亚黄铁矿带深部分离株中发现维生素 B 营养缺陷型。
Genes (Basel). 2023 Jun 26;14(7):1339. doi: 10.3390/genes14071339.
3
Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite Belt.伊比利亚黄铁矿带大陆深部地下耦合的 C、H、N、S 和 Fe 生物地球化学循环。
Environ Microbiol. 2023 Feb;25(2):428-453. doi: 10.1111/1462-2920.16291. Epub 2022 Dec 9.
4
sp. T2.3D-1.1 a Novel Microorganism Sustaining the Iron Cycle in the Deep Subsurface of the Iberian Pyrite Belt.种T2.3D - 1.1：一种维持伊比利亚黄铁矿带深部地下铁循环的新型微生物。
Microorganisms. 2022 Aug 6;10(8):1585. doi: 10.3390/microorganisms10081585.
5
Draft Genome Sequence of sp. Strain T2.31D-1, Isolated from a Drilling Core Sample Obtained 414 Meters below Surface in the Iberian Pyrite Belt.从伊比利亚黄铁矿带地表以下414米处获取的钻孔岩芯样本中分离出的T2.31D-1菌株的基因组草图序列
Microbiol Resour Announc. 2021 Jan 7;10(1):e01165-20. doi: 10.1128/MRA.01165-20.
6
Draft Genome Sequence of sp. Strain T2.3D-1.1, Isolated from 121.8 Meters Deep in the Subsurface of the Iberian Pyrite Belt.从伊比利亚黄铁矿带地下121.8米深处分离出的T2.3D-1.1菌株的基因组草图序列
Microbiol Resour Announc. 2020 Oct 1;9(40):e00190-20. doi: 10.1128/MRA.00190-20.
7
Draft Genome Sequence of sp. Strain T2.26MG-98, Isolated from 492.6 Meters Deep on the Subsurface of the Iberian Pyrite Belt.从伊比利亚黄铁矿带地下492.6米深处分离出的sp. 菌株T2.26MG-98的基因组序列草图
Microbiol Resour Announc. 2019 Apr 18;8(16):e00070-19. doi: 10.1128/MRA.00070-19.
本文引用的文献
1
Viable cyanobacteria in the deep continental subsurface.深大陆地下的存活蓝细菌。
Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10702-10707. doi: 10.1073/pnas.1808176115. Epub 2018 Oct 1.
2
plasmidSPAdes: assembling plasmids from whole genome sequencing data.质粒SPAdes：从全基因组测序数据中组装质粒
Bioinformatics. 2016 Nov 15;32(22):3380-3387. doi: 10.1093/bioinformatics/btw493. Epub 2016 Jul 27.
3
Taxonomy of rhizobia and agrobacteria from the Rhizobiaceae family in light of genomics.基于基因组学的根瘤菌科根瘤菌与土壤杆菌的分类学
Syst Appl Microbiol. 2015 Jun;38(4):287-91. doi: 10.1016/j.syapm.2014.12.002. Epub 2014 Dec 27.
4
Ecological dynamics and complex interactions of Agrobacterium megaplasmids.农杆菌巨型质粒的生态动力学和复杂相互作用。
Front Plant Sci. 2014 Nov 14;5:635. doi: 10.3389/fpls.2014.00635. eCollection 2014.
5
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
6
Scaffolding pre-assembled contigs using SSPACE.使用 SSPACE 搭建预组装 contigs 的支架。
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
7
Preparation of genomic DNA from bacteria.从细菌中制备基因组DNA。
Curr Protoc Mol Biol. 2001 Nov;Chapter 2:Unit 2.4. doi: 10.1002/0471142727.mb0204s56.
8
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
9
Rhizobium selenireducens sp. nov.: a selenite-reducing alpha-Proteobacteria isolated from a bioreactor.新种还原硒根瘤菌：从生物反应器中分离出的一种还原亚硒酸盐的α-变形菌。
Curr Microbiol. 2007 Nov;55(5):455-60. doi: 10.1007/s00284-007-9020-9. Epub 2007 Sep 6.
10
Mauve: multiple alignment of conserved genomic sequence with rearrangements.Mauve：带重排的保守基因组序列多重比对。
Genome Res. 2004 Jul;14(7):1394-403. doi: 10.1101/gr.2289704.
Zotero 插件