Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Department of Comparative Biochemistry, University of California, Berkeley, CA, 94720, USA.
Environ Microbiol. 2019 Feb;21(2):784-799. doi: 10.1111/1462-2920.14500. Epub 2019 Jan 16.
Bacterial genes for molybdenum-containing and tungsten-containing enzymes are often differentially regulated depending on the metal availability in the environment. Here, we describe a new family of transcription factors with an unusual DNA-binding domain related to excisionases of bacteriophages. These transcription factors are associated with genes for various molybdate and tungstate-specific transporting systems as well as molybdo/tungsto-enzymes in a wide range of bacterial genomes. We used a combination of computational and experimental techniques to study a member of the TF family, named TaoR (for tungsten-containing aldehyde oxidoreductase regulator). In Desulfovibrio vulgaris Hildenborough, a model bacterium for sulfate reduction studies, TaoR activates expression of aldehyde oxidoreductase aor and represses tungsten-specific ABC-type transporter tupABC genes under tungsten-replete conditions. TaoR binding sites at aor promoter were identified by electrophoretic mobility shift assay and DNase I footprinting. We also reconstructed TaoR regulons in 45 Deltaproteobacteria by comparative genomics approach and predicted target genes for TaoR family members in other Proteobacteria and Firmicutes.
细菌中含钼和含钨酶的基因通常根据环境中金属的可用性进行差异调控。在这里,我们描述了一类新型转录因子,它们具有与噬菌体内切酶相关的不寻常的 DNA 结合结构域。这些转录因子与各种钼酸盐和钨酸盐特异性转运系统以及广泛的细菌基因组中的钼/钨酶基因相关。我们使用组合的计算和实验技术来研究 TF 家族的一个成员,命名为 TaoR(用于含钨醛氧化还原酶的调节因子)。在脱硫弧菌 Hildenborough 中,一种硫酸盐还原研究的模式细菌,TaoR 在钨充足的条件下激活醛氧化还原酶 aor 的表达,并抑制钨特异性 ABC 型转运体 tupABC 基因的表达。通过电泳迁移率变动分析和 DNase I 足迹实验确定了 aor 启动子上的 TaoR 结合位点。我们还通过比较基因组学方法重建了 45 种δ变形菌中的 TaoR 调控网络,并预测了其他 Proteobacteria 和 Firmicutes 中 TaoR 家族成员的靶基因。