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北美地区的群体分化。

Population Differentiation Within in North America.

机构信息

1 Rutgers University Cooperative Extension of Hunterdon County, Flemington, NJ 08822-2900.

2 Department of Plant Biology, Rutgers University, New Brunswick, NJ 08901; and.

出版信息

Phytopathology. 2019 Jun;109(6):1074-1082. doi: 10.1094/PHYTO-06-18-0209-R. Epub 2019 Apr 29.

Abstract

, a biotrophic ascomycete in the order Diaporthales, causes eastern filbert blight (EFB) of hazelnuts ( spp.). Until recently, little has been documented on its genetic diversity and population structure. In this study, 18 simple sequence repeat markers were used to fingerprint 182 accessions of the fungus originating from across North America. Our results, based on summary statistics of the allelic data, a discriminant analysis of principal components (DAPC) scatterplot, an unweighted pair group method with arithmetic mean (UPGMA) dendrogram, and analysis of multilocus genotypes, show that exhibits considerable genetic diversity across multiple populations. Eleven clusters were resolved from the DAPC scatterplot, five of which were validated by statistically supported clusters in the UPGMA dendrogram. The 11 DAPC clusters were statistically significant via an analysis of molecular variance. Dendrogram topology and DAPC scatterplot groups showed some correlation with collection origin; samples collected in proximity tended to cluster together and be genetically similar. However, some locations held populations that were diverse and some populations with a high degree of similarity had disparate origins, suggesting movement by humans. Overall, the results demonstrate the presence of multiple, genetically distinct populations of in North America and serve as a reference to assist in understanding and managing EFB.

摘要

榛子球腔菌,属于座囊菌目,是一种活体营养的子囊菌,可引起榛树的东部榛枯萎病(EFB)。 直到最近,对其遗传多样性和种群结构的研究才很少。 在这项研究中,使用了 18 个简单序列重复标记来对来自北美各地的 182 个真菌分离物进行指纹识别。 基于等位基因数据的汇总统计,主成分判别分析(DAPC)散点图,算术平均值的非加权对群聚类法(UPGMA)树状图以及多位点基因型分析的结果表明,该真菌在多个种群中表现出相当大的遗传多样性。 通过 DAPC 散点图解析出 11 个聚类,其中 5 个聚类通过 UPGMA 树状图中统计学支持的聚类得到验证。 11 个 DAPC 聚类通过分子方差分析是统计学上显著的。 树状图拓扑和 DAPC 散点图群与采集地之间存在一定的相关性; 靠近采集的样本往往聚类在一起,遗传上也相似。 但是,有些位置的种群多样,有些种群的相似度很高,但起源却不同,这表明是人类的迁徙所致。 总体而言,该结果表明,在北美存在多个遗传上不同的榛子球腔菌种群,可作为参考,以帮助理解和管理 EFB。

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