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通过Car-Parrinello和路径积分分子动力学对托酚酮和硫代托酚酮晶体中的氢键进行研究。

Investigations of the hydrogen bond in the crystals of tropolone and thiotropolone via car-parrinello and path integral molecular dynamics.

作者信息

Durlak Piotr, Latajka Zdzisław

机构信息

Faculty of Chemistry, University of Wrocław, Wrocław 50-383, Poland.

出版信息

J Comput Chem. 2019 Feb 5;40(4):671-687. doi: 10.1002/jcc.25753. Epub 2018 Dec 14.

Abstract

Car-Parrinello and path integrals molecular dynamics (CPMD and PIMD) simulations were carried out for the 10π-electron aromatic systems: 2-hydroxy-2,4,6-cycloheptatrien-1-one, commonly known as Tropolone (I) and 2-hydroxy-2,4,6-cycloheptatriene-1-thione, called Thiotropolone (II) in vacuo and in the solid state. The extremely fast proton transfer (FPT) and "prototropy" tautomerism in the keto-enol (thione-enethiol) systems have been analyzed on the basis of CPMD and PIMD methods level. Comparisons of two-dimensional (2D) free-energy landscapes of reaction coordinate δ-parameter and R or R distances shows that the OH… tautomer to be more favorable in the Thiotropolone. The hydrogen between the oxygen and the sulfur atoms adopts a starkly asymmetrical position in the double potential well. The values of the energy barriers for the FPT were calculated and suggested a strong hydrogen bond with low barrier for FPT mechanism. These studies and the 2D average index of π-delocalization 〈λ〉 landscape of time evolutions of R and R or R distances for the both crystals indicate that hydrogen bonds in the crystals of Tropolone (I) and Thiotropolone (II) have characteristic properties for the type of bonding model resonance-assisted hydrogen bonds and also low-barrier hydrogen bonds. In the crystal of the Thiotropolone (II), we found the hydrogen bond OH…S existing without the equilibrium of the two tautomers whereas in the crystal of the Tropolone (I) has been confirmed the hydrogen bond OH…O existing with the equilibrium of the two tautomers. It was also found the significant differences in frequency, speed, and the image of the FPT in the studied crystals. © 2018 Wiley Periodicals, Inc.

摘要

采用Car-Parrinello和路径积分分子动力学(CPMD和PIMD)模拟方法,对具有10个π电子的芳香体系:2-羟基-2,4,6-环庚三烯-1-酮(俗称托酚酮(I))和2-羟基-2,4,6-环庚三烯-1-硫酮(在固态和真空中称为硫代托酚酮(II))进行了研究。基于CPMD和PIMD方法水平,分析了酮-烯醇(硫酮-烯硫醇)体系中极快速的质子转移(FPT)和“质子互变异构”互变异构现象。反应坐标δ参数与R或R'距离的二维(2D)自由能景观比较表明,硫代托酚酮中OH…互变异构体更有利。氧原子和硫原子之间的氢在双势阱中处于明显不对称的位置。计算了FPT的能垒值,并表明存在具有低能垒的强氢键,这有利于FPT机制。这些研究以及两种晶体中R和R或R'距离随时间演化的二维π离域平均指数〈λ〉景观表明,托酚酮(I)和硫代托酚酮(II)晶体中的氢键具有共振辅助氢键和低能垒氢键类型的特征性质。在硫代托酚酮(II)晶体中,我们发现氢键OH…S在两种互变异构体不平衡的情况下存在,而在托酚酮(I)晶体中,已证实氢键OH…O在两种互变异构体平衡的情况下存在。还发现所研究晶体中FPT的频率、速度和图像存在显著差异。©2018威利期刊公司

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