Tanaka Hikaru, Kuwahata Kazuaki, Tachikawa Masanori, Udagawa Taro
Department of Chemistry and Biomolecular Science, Faculty of Engineering, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.
Graduate School of NanobioScience, Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama 236-0027, Japan.
ACS Omega. 2022 Apr 15;7(16):14244-14251. doi: 10.1021/acsomega.2c00857. eCollection 2022 Apr 26.
The compounds Fujikurin A, B, and D, recently isolated from , possess intramolecular low-barrier hydrogen bonds (LBHBs), which are hydrogen bonds with a very low-energy barrier for proton transfer. The isolated compounds have a hydrogen-bonded proton that appears to rapidly switch between two equilibrium states via a transition state (TS). To understand the characteristics of these intramolecular LBHBs in detail, we performed path integral molecular dynamics (PIMD) simulations, which can consider nuclear quantum effects (NQEs) under a finite temperature. The PIMD simulations predicted that the NQE completely washed out the energy barrier for the proton transfer reaction. Consequently, a single-well shape emerged in the results, along with the effective free-energy potential surface for the hydrogen-bonded proton distribution. Thus, we conclude that the hydrogen-bonded proton in Fujikurin does not in fact transfer between two equilibrium structures but widely delocalizes around the global minimum structure involving the TS region.
最近从[具体来源未给出]中分离出的藤仓菌素A、B和D化合物具有分子内低势垒氢键(LBHBs),这是一种质子转移能垒非常低的氢键。分离出的化合物有一个氢键质子,它似乎通过一个过渡态(TS)在两个平衡态之间快速切换。为了详细了解这些分子内LBHBs的特性,我们进行了路径积分分子动力学(PIMD)模拟,该模拟可以在有限温度下考虑核量子效应(NQEs)。PIMD模拟预测,NQE完全消除了质子转移反应的能垒。因此,结果中出现了单阱形状以及氢键质子分布的有效自由能势能面。因此,我们得出结论,藤仓菌素中的氢键质子实际上并非在两个平衡结构之间转移,而是在涉及TS区域的全局最小结构周围广泛离域。