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来自约旦的VIIi基因型新城疫病毒的首个基因组序列

First Genome Sequence of Newcastle Disease Virus of Genotype VIIi from Jordan.

作者信息

Ababneh Mustafa, Ferreira Helena L, Khalifeh Mohammad, Suarez David L, Afonso Claudio L

机构信息

Department of Basic Medical Veterinary Sciences, Jordan University of Science & Technology, Irbid, Jordan.

U.S. National Poultry Research Center, Southeast Poultry Research Laboratory, Athens, Georgia, USA.

出版信息

Microbiol Resour Announc. 2018 Dec 13;7(23). doi: 10.1128/MRA.01136-18. eCollection 2018 Dec.

DOI:10.1128/MRA.01136-18
PMID:30574579
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6298546/
Abstract

Newcastle disease virus (NDV) was detected by reverse transcriptase PCR (RT-PCR) from total RNA isolated from a chicken spleen of a backyard flock in Jordan. The complete coding genome sequence of NDV/chicken/Jordan/J11-spleen/2018 was obtained with MiSeq (Illumina) sequencing. Phylogenetic analysis of the concatenated coding sequences classified the virus as class II subgenotype VIIi.

摘要

通过逆转录聚合酶链反应(RT-PCR)从约旦一个后院鸡群的鸡脾脏分离的总RNA中检测到新城疫病毒(NDV)。利用MiSeq(Illumina)测序获得了NDV/鸡/约旦/J11-脾脏/2018的完整编码基因组序列。对串联编码序列的系统发育分析将该病毒归类为II类VIIi亚基因型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76ce/6298546/fa9252cb0c2c/mra9991803450001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76ce/6298546/fa9252cb0c2c/mra9991803450001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76ce/6298546/fa9252cb0c2c/mra9991803450001.jpg

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Virol J. 2018 Jan 12;15(1):9. doi: 10.1186/s12985-017-0914-2.
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Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017).病毒分类学的变化以及由国际病毒分类委员会批准的《国际病毒分类和命名法典》(2017年)。
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