Graduate School of Environmental and Life Sciences, Okayama University, 1-1-1, Tsushima-naka, Okayama 700-8530, Japan.
Faculty of Life Sciences and Institute for Protein Dynamics, Kyoto Sangyo University, Kyoto 603-8555, Japan.
Biochim Biophys Acta Proteins Proteom. 2019 Mar;1867(3):194-201. doi: 10.1016/j.bbapap.2018.12.005. Epub 2018 Dec 18.
Oxidative folding of extracellular proteins is pivotal for the biogenesis of bacterial virulence factors. Escherichia coli DsbA catalyzes disulfide bond formation in extracellular proteins and in multicomponent architectures on the cell surface. The present study assessed the significance of the redox properties of DsbA by exploiting the plaque-forming ability of bacteriophage M13, which specifically recognizes F-pili during infection of the host cell. A library of mutant dsbA genes was constructed by randomizing the dipeptide XX sequence in the active-site redox motif CXXC and then screened for mutants that altered plaque yield and appearance. In total, 24 dsbA mutant alleles produced substantially different degrees of complementation, and one mutant dsbA gene that encodes a CDIC sequence produced over 40-fold more clear plaques than wild type dsbA. The redox potential of purified DsbA [CDIC] was -172 mV, representing a less-oxidizing catalysis than the wild type DsbA (-122 mV), but one that is closer to yeast protein disulfide isomerase (-175 mV). DsbA [CDIC] exhibited a greater ability to refold fully denatured glutathionylated ribonuclease A than the wild type enzyme and a DsbA [CRIC] mutant, which has the same redox potential of -172 mV. Homology modeling and molecular dynamics simulation suggest that the CDIC mutant may have an enlarged substrate-binding cleft near the redox center, which confers kinetic advantages when acting on protein substrates.
细胞外蛋白质的氧化折叠对于细菌毒力因子的生物发生至关重要。大肠杆菌 DsbA 催化细胞外蛋白质和细胞表面多组分结构中的二硫键形成。本研究通过利用噬菌体 M13 的噬斑形成能力来评估 DsbA 的氧化还原特性的重要性,噬菌体 M13 在感染宿主细胞时特异性识别 F-菌毛。通过随机化活性位点氧化还原模体 CXXC 中的二肽 XX 序列构建了一个 dsbA 基因突变体文库,然后筛选出改变噬斑产量和外观的突变体。总共,24 个 dsbA 突变等位基因产生了显著不同程度的互补性,一个编码 CDIC 序列的突变 dsbA 基因产生的清晰噬斑比野生型 dsbA 多 40 多倍。纯化的 DsbA [CDIC]的氧化还原电位为-172 mV,代表比野生型 DsbA(-122 mV)更具氧化催化作用,但更接近酵母蛋白二硫键异构酶(-175 mV)。DsbA [CDIC]比野生型酶和具有相同氧化还原电位-172 mV 的 DsbA [CRIC]突变体更能重新折叠完全变性的谷胱甘肽化核糖核酸酶 A。同源建模和分子动力学模拟表明,CDIC 突变体可能在氧化还原中心附近具有扩大的底物结合裂缝,这在作用于蛋白质底物时赋予了动力学优势。