a Department of Chemistry, Faculty of Basic and Applied Sciences , Sri Guru Granth Sahib World University , Fatehgarh Sahib , India.
b School of Chemistry and Biochemistry , Thapar Institute of Engineering and Technology , Patiala , India.
J Biomol Struct Dyn. 2019 Aug;37(12):3183-3197. doi: 10.1080/07391102.2018.1511475. Epub 2018 Dec 24.
Amyloid-β (Aβ) peptide instinctively aggregate and form plaques in the brain of Alzheimer's disease (AD) patients. At present, there is no cure or treatment for AD, and significant effort has, therefore, been made to discover potent drugs against AD. Previous studies reported that a resveratrol and clioquinol hybrid compound [()-5-(4-hydroxystyryl)quinolone-8-ol], , strongly inhibit Aβ aggregation and disassemble preformed fibrils. However, the atomic level details of the inhibitory mechanism of against Aβ aggregation and protrofibril disassembly remains elusive. In this regard, molecular docking and molecular dynamics (MD) simulation of Aβ monomer, Aβ monomer- complex, Aβ protofibril, and Aβ protofibril- complex were performed in the present study. MD simulations highlighted that bind in the central hydrophobic core (CHC) region, i.e., KLVFF (16-20) of Aβ monomer, which plays a critical role in Aβ aggregation. promote the formation of native helical conformation in the Aβ monomer and decrease the probability of D23-K28 salt bridge interaction that is critical in the formation of aggregation-prone β-sheet conformation. Further, destabilize Aβ protofibril structure by increasing the interchain distance between chains A-B, disrupting the salt-bridge interaction between D23-K28, and decreasing the number of backbone hydrogen bonds between chains A-B of the Aβ protofibril structure. The insights into the underlying inhibitory mechanism of small molecules that display potential anti-aggregation activity against Aβ will be beneficial for the rational design of more potent drug molecules against AD. Communicated by Ramaswamy H. Sarma.
淀粉样蛋白-β(Aβ)肽本能地在阿尔茨海默病(AD)患者的大脑中聚集并形成斑块。目前,AD 还没有治愈或治疗方法,因此,人们做出了巨大的努力来发现针对 AD 的有效药物。先前的研究报道,白藜芦醇和氯碘羟喹的杂合化合物[()-5-(4-羟基苯乙烯基)喹啉-8-醇],强烈抑制 Aβ聚集并使原纤维解聚。然而,[()-5-(4-羟基苯乙烯基)喹啉-8-醇]抑制 Aβ聚集和原纤维解聚的原子水平细节仍然难以捉摸。在这方面,本研究对 Aβ单体、Aβ单体-复合物、Aβ原纤维和 Aβ原纤维-复合物进行了分子对接和分子动力学(MD)模拟。MD 模拟强调,[()-5-(4-羟基苯乙烯基)喹啉-8-醇]结合在 Aβ单体的中央疏水区(CHC)区域,即 Aβ单体的 KLVFF(16-20),这在 Aβ聚集中起着关键作用。[()-5-(4-羟基苯乙烯基)喹啉-8-醇]促进 Aβ单体中天然螺旋构象的形成,并降低 D23-K28 盐桥相互作用的可能性,D23-K28 盐桥相互作用对于形成易于聚集的β-折叠构象至关重要。此外,[()-5-(4-羟基苯乙烯基)喹啉-8-醇]通过增加链 A-B 之间的链间距离、破坏 D23-K28 之间的盐桥相互作用以及减少 Aβ原纤维结构中链 A-B 之间的氢键数量来破坏 Aβ原纤维结构的稳定性。这些小分子潜在的抗聚集活性对 Aβ的抑制机制的见解将有助于针对 AD 设计更有效的药物分子。由 Ramaswamy H. Sarma 传达。
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