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氢键依赖的构象转变:来自实验热化学的计算挑战。

Hydrogen-Bond-Dependent Conformational Switching: A Computational Challenge from Experimental Thermochemistry.

机构信息

Chemistry Research Laboratory , University of Oxford , 12 Mansfield Road , Oxford OX1 3TA , U.K.

Department of Psychiatry , Massachusetts General Hospital , 55 Fruit Street , Boston , Massachusetts 02114 , United States.

出版信息

J Org Chem. 2019 Jan 18;84(2):613-621. doi: 10.1021/acs.joc.8b02436. Epub 2019 Jan 9.

DOI:10.1021/acs.joc.8b02436
PMID:30586500
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6467729/
Abstract

We have compiled an experimental data set (SWITCH10) of equilibrium constants for a series of hydrogen-bond-dependent conformational switches. These organic molecules possess common functionalities and are representative in terms of size and composition of systems routinely studied computationally. They exist as two well-defined conformations which serve as a useful tool to benchmark computational estimates of experimental Gibbs energy differences. We examine the performance of HF theory and a variety of density functionals (B3LYP, B3LYP-D3, CAM-B3LYP, ωB97X-D, M06-2X) against these experimental benchmarks. Surprisingly, despite a strong similarity between the two switch conformations, the average errors (0.4-1.7 kcal·mol) obtained across the data set for all methods are larger than obtained with HF calculations. B3LYP was found to outperform implicitly and explicitly dispersion-corrected functionals, with an average error smaller by 1 kcal·mol. Unsystematic errors in the optimized structures were found to contribute to the relatively poor performance obtained, while quasi-rigid rotor harmonic oscillator thermal contributions are important in improving the accuracy of computed Gibbs energy differences. These results emphasize the challenge of quantitative accuracy in computing solution-phase thermochemistry for flexible systems and caution against the often used (but unstated) assumption of favorable error cancellation in comparing conformers or stereoisomers.

摘要

我们编译了一系列氢键依赖构象开关的平衡常数实验数据集(SWITCH10)。这些有机分子具有共同的功能,在大小和组成上代表了常规计算研究的系统。它们存在两种明确的构象,这是基准实验吉布斯自由能差计算的有用工具。我们研究了 HF 理论和各种密度泛函(B3LYP、B3LYP-D3、CAM-B3LYP、ωB97X-D、M06-2X)对这些实验基准的性能。令人惊讶的是,尽管两种开关构象非常相似,但所有方法在整个数据集上获得的平均误差(0.4-1.7 kcal·mol)都大于 HF 计算的误差。B3LYP 被发现优于隐含和显式色散校正泛函,平均误差小 1 kcal·mol。发现优化结构中的系统误差会导致计算得到的吉布斯自由能差的准确性相对较差,而准刚性转子谐振子热贡献对于提高计算得到的吉布斯自由能差的准确性很重要。这些结果强调了计算柔性系统溶液相热化学的定量准确性的挑战,并警告人们在比较构象体或立体异构体时,经常使用(但未说明)的有利误差抵消假设。