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深入了解质粒在耐冷和耐金属物种适应南极极端环境中的多样性及可能作用。

Insight Into the Diversity and Possible Role of Plasmids in the Adaptation of Psychrotolerant and Metalotolerant spp. to Extreme Antarctic Environments.

作者信息

Romaniuk Krzysztof, Golec Piotr, Dziewit Lukasz

机构信息

Department of Bacterial Genetics, Faculty of Biology, Institute of Microbiology, University of Warsaw, Warsaw, Poland.

出版信息

Front Microbiol. 2018 Dec 18;9:3144. doi: 10.3389/fmicb.2018.03144. eCollection 2018.

Abstract

spp. are coryneform Gram-positive aerobic bacteria, belonging to the class . Representatives of this genus have mainly been isolated from soil, mud, sludge or sewage, and are usually mesophiles. In recent years, the presence of spp. was also confirmed in various extreme, including permanently cold, environments. In this study, 36 psychrotolerant and metalotolerant strains isolated from petroleum-contaminated soil from the King George Island (Antarctica), were screened for the presence of plasmids. The identified replicons were thoroughly characterized in order to assess their diversity and role in the adaptation of spp. to harsh Antarctic conditions. The screening process identified 11 different plasmids, ranging in size from 8.4 to 90.6 kb. A thorough genomic analysis of these replicons detected the presence of numerous genes encoding proteins that potentially perform roles in adaptive processes such as (i) protection against ultraviolet (UV) radiation, (ii) resistance to heavy metals, (iii) transport and metabolism of organic compounds, (iv) sulfur metabolism, and (v) protection against exogenous DNA. Moreover, 10 of the plasmids carry genetic modules enabling conjugal transfer, which may facilitate their spread among bacteria in Antarctic soil. In addition, transposable elements were identified within the analyzed plasmids. Some of these elements carry passenger genes, which suggests that these replicons may be actively changing, and novel genetic modules of adaptive value could be acquired by transposition events. A comparative genomic analysis of plasmids identified in this study and other available plasmids was performed. This showed only limited similarities between plasmids of Antarctic strains and replicons of other, mostly mesophilic, isolates. This indicates that the plasmids identified in this study are novel and unique replicons. In addition, a thorough meta-analysis of 247 plasmids of psychrotolerant bacteria was performed, revealing the important role of these replicons in the adaptation of their hosts to extreme environments.

摘要

某菌属是棒状革兰氏阳性需氧细菌,属于某类。该属的代表菌株主要从土壤、泥浆、污泥或污水中分离得到,通常为嗜温菌。近年来,在包括永久寒冷环境在内的各种极端环境中也证实了该菌属的存在。在本研究中,从乔治王岛(南极洲)受石油污染的土壤中分离出36株耐冷和耐金属的该菌属菌株,筛选其是否存在质粒。对鉴定出的复制子进行了全面表征,以评估它们的多样性以及在该菌属适应南极恶劣条件中的作用。筛选过程鉴定出11种不同的质粒,大小从8.4 kb到90.6 kb不等。对这些复制子进行的全面基因组分析检测到存在许多编码蛋白质的基因,这些蛋白质可能在适应性过程中发挥作用,例如:(i)抵御紫外线辐射;(ii)对重金属的抗性;(iii)有机化合物的运输和代谢;(iv)硫代谢;(v)对外源DNA的保护。此外,其中10个质粒携带使接合转移成为可能的遗传模块,这可能有助于它们在南极土壤中的细菌间传播。此外,在分析的质粒中鉴定出了转座元件。其中一些元件携带过客基因,这表明这些复制子可能在积极变化,并且通过转座事件可能获得具有适应价值的新遗传模块。对本研究中鉴定出的质粒与其他可用的该菌属质粒进行了比较基因组分析。结果表明,南极该菌属菌株的质粒与其他大多数嗜温菌株的复制子之间只有有限的相似性。这表明本研究中鉴定出的质粒是新颖且独特的复制子。此外,对247个耐冷细菌的质粒进行了全面的荟萃分析,揭示了这些复制子在其宿主适应极端环境中的重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a12/6305408/d28fb8b0e991/fmicb-09-03144-g0001.jpg

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