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从北极和南极冰川分离出的耐冷菌的质粒——多样性及其在适应极地环境中的作用

Plasmids of Psychrotolerant spp. Isolated From Arctic and Antarctic Glaciers - Diversity and Role in Adaptation to Polar Environments.

作者信息

Ciok Anna, Budzik Karol, Zdanowski Marek K, Gawor Jan, Grzesiak Jakub, Decewicz Przemyslaw, Gromadka Robert, Bartosik Dariusz, Dziewit Lukasz

机构信息

Department of Bacterial Genetics, Institute of Microbiology, Faculty of Biology, University of Warsaw, Warsaw, Poland.

Department of Antarctic Biology, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.

出版信息

Front Microbiol. 2018 Jun 18;9:1285. doi: 10.3389/fmicb.2018.01285. eCollection 2018.

Abstract

Cold-active bacteria of the genus (class ) are important components of glacial microbiomes. In this study, extrachromosomal replicons of 26 psychrotolerant strains, isolated from Arctic and Antarctic glaciers, were identified, sequenced, and characterized. The plasmidome of these strains consists of 13 replicons, ranging in size from 3,378 to 101,077 bp. sequence analyses identified the conserved backbones of these plasmids, composed of genes required for plasmid replication, stable maintenance, and conjugal transfer. Host range analysis revealed that all of the identified plasmids are narrow-host-range replicons, only able to replicate in bacteria of closely related genera ( and ) of the family. Special attention was paid to the identification of plasmid auxiliary genetic information, which may contribute to the adaptation of bacteria to environmental conditions occurring in glaciers. Detailed analysis revealed the presence of genes encoding proteins potentially involved in (i) protection against reactive oxygen species, ultraviolet radiation, and low temperatures; (ii) transport and metabolism of organic compounds; (iii) transport of metal ions; and (iv) resistance to heavy metals. Some of the plasmids also carry genes required for the molecular assembly of iron-sulfur [Fe-S] clusters. Functional analysis of the predicted heavy metal resistance determinants demonstrated that their activity varies, depending on the host strain. This study provides the first molecular insight into the mobile DNA of spp. inhabiting polar glaciers. It has generated valuable data on the structure and properties of a pool of plasmids and highlighted their role in the biology of psychrotolerant strains and their adaptation to the environmental conditions of Arctic and Antarctic glaciers.

摘要

(某属,某类)的嗜冷细菌是冰川微生物群落的重要组成部分。在本研究中,对从北极和南极冰川分离出的26株耐冷(该属)菌株的染色体外复制子进行了鉴定、测序和表征。这些菌株的质粒组由13个复制子组成,大小从3378到101077碱基对不等。序列分析确定了这些质粒的保守骨架,其由质粒复制、稳定维持和接合转移所需的基因组成。宿主范围分析表明,所有鉴定出的质粒都是窄宿主范围的复制子,仅能在(该科)密切相关属(和)的细菌中复制。特别关注了质粒辅助遗传信息的鉴定,其可能有助于细菌适应冰川中出现的环境条件。详细分析揭示了存在编码可能参与以下方面的蛋白质的基因:(i)抵御活性氧、紫外线辐射和低温;(ii)有机化合物的运输和代谢;(iii)金属离子的运输;(iv)对重金属的抗性。一些质粒还携带铁硫[Fe-S]簇分子组装所需的基因。对预测的重金属抗性决定因素的功能分析表明,它们的活性因宿主菌株而异。本研究首次对栖息于极地冰川的(该属)物种的移动DNA进行了分子洞察。它产生了关于一组质粒的结构和特性的有价值数据,并突出了它们在耐冷(该属)菌株生物学及其对北极和南极冰川环境条件适应中的作用。

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