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鉴定miR-375作为食管鳞状细胞癌潜在的预后生物标志物:基于TCGA的生物信息学分析和荟萃分析

Identification of miR-375 as a potential prognostic biomarker for esophageal squamous cell cancer: A bioinformatics analysis based on TCGA and meta-analysis.

作者信息

Luo He-San, Wu De-Hua

机构信息

Department of Radiation Oncology, Nanfang Hospital, Southern Medical University, Guangzhou, 510515, China; Department of Radiotherapy, Shantou Central Hospital, Shantou, 515031, China.

Department of Radiation Oncology, Nanfang Hospital, Southern Medical University, Guangzhou, 510515, China.

出版信息

Pathol Res Pract. 2019 Mar;215(3):512-518. doi: 10.1016/j.prp.2019.01.009. Epub 2019 Jan 7.

DOI:10.1016/j.prp.2019.01.009
PMID:30638952
Abstract

Accumulating evidence has demonstrated that aberrantly expressed miRNAs in cancer tissues regulated various cellular processes related to carcinogenesis. The present study aimed to identify the differentially expressed miRNAs between esophageal squamous cell cancer (ESCC) and adjacent normal esophageal tissue (ANET). In our present study, we identified 129 differentially expressed miRNAs between ESCC and ANET by analyzing high-throughput miRNA data downloaded from TCGA database. After investigating the prognostic value of the 129 differential expressed miRNAs, eight miRNAs were found to be associated with prognosis of patients with ESCC. The clinical significance and bio-function of miR-375 was further examined. We performed Gene Set Enrichment Analysis (GSEA) to identify the top three gene sets that significantly altered between the patients with miR-375 low expression and high expression. In order to explore the mechanism of the development and progression of ESCC, the role of miR-375 in ESCC and its four candidate target genes was examined. At last, we performed a meta-analysis to verify the prognostic value of miR-375 in ESCC. In conclusion, our findings suggest that miR-375 serves as a promising independent prognostic factor for ESCC and function as a tumor suppressor.

摘要

越来越多的证据表明,癌症组织中异常表达的微小RNA(miRNA)调控着与致癌作用相关的各种细胞过程。本研究旨在鉴定食管鳞状细胞癌(ESCC)与癌旁正常食管组织(ANET)之间差异表达的miRNA。在本研究中,我们通过分析从TCGA数据库下载的高通量miRNA数据,鉴定出ESCC与ANET之间129个差异表达的miRNA。在研究这129个差异表达miRNA的预后价值后,发现8个miRNA与ESCC患者的预后相关。进一步研究了miR-375的临床意义和生物学功能。我们进行了基因集富集分析(GSEA),以鉴定在miR-375低表达和高表达患者之间显著改变的前三个基因集。为了探索ESCC发生发展的机制,研究了miR-375在ESCC及其四个候选靶基因中的作用。最后,我们进行了一项荟萃分析,以验证miR-375在ESCC中的预后价值。总之,我们的研究结果表明,miR-3

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