Programa Institucional de Fomento a la Investigación, Desarrollo e Innovación, Universidad Tecnológica Metropolitana, Ignacio Valdivieso 2409, Casilla 9845, Santiago 8940577, Chile.
Instituto de Química de Recursos Naturales, Universidad de Talca, Av. Lircay s/n, Casilla 747, Talca 3460000, Chile.
Molecules. 2019 Jan 14;24(2):280. doi: 10.3390/molecules24020280.
Intramolecular hydrogen bond (IMHB) interactions have attracted considerable attention due to their central role in molecular structure, chemical reactivity, and interactions of biologically active molecules. Precise correlations of the strength of IMHB's with experimental parameters are a key goal in order to model compounds for drug discovery. In this work, we carry out an experimental (NMR) and theoretical (DFT) study of the IMHB in a series of structurally similar -carbonyl hydroquinones. Geometrical parameters, as well as Natural Bond Orbital (NBO) and Quantum Theory of Atoms in Molecules (QTAIM) parameters for IMHB were compared with experimental NMR data. Three DFT functionals were employed to calculated theoretical parameters: B3LYP, M06-2X, and ωB97XD. OH distance is the most suitable geometrical parameter to distinguish among similar IMHBs. Second order stabilization energies ΔE from NBO analysis and hydrogen bond energy (E) obtained from QTAIM analysis also properly distinguishes the order in strength of the studied IMHB. ΔE from NBO give values for the IMHB below 30 kcal/mol, while E from QTAIM analysis give values above 30 kcal/mol. In all cases, the calculated parameters using ωB97XD give the best correlations with experimental ¹H-NMR chemical shifts for the IMHB, with R² values around 0.89. Although the results show that these parameters correctly reflect the strength of the IMHB, when the weakest one is removed from the analysis, arguing experimental considerations, correlations improve significantly to values around 0.95 for R².
分子内氢键 (IMHB) 相互作用由于其在分子结构、化学反应性和生物活性分子相互作用中的核心作用而引起了相当大的关注。精确关联 IMHB 的强度与实验参数是为药物发现建模化合物的关键目标。在这项工作中,我们对一系列结构相似的 -羰基对苯二酚中的 IMHB 进行了实验(NMR)和理论(DFT)研究。比较了 IMHB 的几何参数以及自然键轨道(NBO)和分子中的原子量子理论(QTAIM)参数与实验 NMR 数据。使用了三种 DFT 泛函来计算理论参数:B3LYP、M06-2X 和 ωB97XD。OH 距离是区分相似 IMHB 的最适合的几何参数。NBO 分析的二阶稳定化能 ΔE 和 QTAIM 分析得到的氢键能 (E) 也可以适当区分研究的 IMHB 的强度顺序。NBO 中的 ΔE 给出了低于 30 kcal/mol 的 IMHB 值,而 QTAIM 分析得到的 E 值大于 30 kcal/mol。在所有情况下,使用 ωB97XD 计算的参数与 IMHB 的实验 ¹H-NMR 化学位移具有最佳相关性,R² 值约为 0.89。尽管结果表明这些参数正确反映了 IMHB 的强度,但当从分析中去除最弱的一个时,根据实验考虑,相关性会显著提高到 R² 值约为 0.95。