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酵母细胞质动力蛋白基于微管运输的集体效应。

Collective effects of yeast cytoplasmic dynein based microtubule transport.

机构信息

Div. of Biology, IISER Pune, Dr Homi Bhabha Road, Pune, India.

出版信息

Soft Matter. 2019 Feb 13;15(7):1571-1581. doi: 10.1039/c8sm01434e.

Abstract

Teams of cortically anchored dyneins pulling at microtubules (MTs) are known to be essential for aster, spindle and nuclear positioning during cell division and fertilization. While the single-molecule basis of dynein processivity is now better understood, the effect of increasing numbers of motors on transport is not clear. Here, we examine the collective transport properties of a Saccharomyces cerevisiae cytoplasmic dynein fragment, widely used as a minimal model, by a combination of quantitative MT gliding assays and stochastic simulations. We find both MT lengths and motor densities qualitatively affect the degree of randomness of MT transport. However, the directionality and velocity of MTs increase above a threshold number of motors (N) interacting with a filament. To better understand this behavior, we simulate a gliding assay based on a model of uniformly distributed immobilized motors transporting semi-flexible MTs. Each dynein dimer is modeled as an effective stochastic stepper with asymmetric force dependent detachment dynamics, based on single-molecule experiments. Simulations predict increasing numbers of motors (N) result in a threshold dependent transition in directionality and transport velocity and a monotonic decrease in effective diffusivity. Thus both experiment and theory show qualitative agreement in the emergence of coordination in transport above a threshold number of motor heads. We hypothesize that the phase-transition like property of this dynein could play a role in vivo during yeast mitosis, when this dynein localizes to the cortex and pulls astral MTs of increasing length, resulting in correct positioning and orientation of the nucleus at the bud-neck.

摘要

众所周知,在细胞分裂和受精过程中,皮层锚定的动力蛋白(dynein)团队通过拉动微管(MTs)对于星体、纺锤体和核定位是必不可少的。虽然现在对动力蛋白的单体分子基础的连续性有了更好的理解,但增加的动力蛋白数量对运输的影响尚不清楚。在这里,我们通过定量 MT 滑行测定和随机模拟相结合,研究了广泛用作最小模型的酿酒酵母细胞质动力蛋白片段的集体运输特性。我们发现 MT 长度和马达密度都定性地影响 MT 运输的随机性程度。然而,在与纤维相互作用的马达数量(N)超过一定阈值时,MT 的方向性和速度会增加。为了更好地理解这种行为,我们模拟了基于均匀分布固定马达运输半柔性 MT 的滑行测定的模型。根据单分子实验,将每个动力蛋白二聚体建模为具有不对称力依赖性脱离动力学的有效随机步进器。模拟预测,随着马达数量(N)的增加,方向性和运输速度会出现依赖于阈值的转变,而有效扩散率会单调下降。因此,实验和理论都表明,在超过一定数量的马达头时,运输中的协调会出现定性的一致性。我们假设这种动力蛋白的类似相变特性可能在酵母有丝分裂期间在体内发挥作用,因为这种动力蛋白定位于皮层并拉动越来越长的星体 MT,从而导致核在芽颈处的正确定位和定向。

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