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定向进化尖孢镰刀菌 FoFaeC 型 C 型阿魏酸酯酶及其改良变体的分子对接分析。

Directed evolution of the type C feruloyl esterase from Fusarium oxysporum FoFaeC and molecular docking analysis of its improved variants.

机构信息

Department of Chemical Sciences, University of Naples "Federico II", Via Cintia 4, 80126, Naples, Italy.

LISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France.

出版信息

N Biotechnol. 2019 Jul 25;51:14-20. doi: 10.1016/j.nbt.2019.01.008. Epub 2019 Jan 24.

Abstract

The need to develop competitive and eco-friendly processes in the cosmetic industry leads to the search for new enzymes with improved properties for industrial bioconversions in this sector. In the present study, a complete methodology to generate, express and screen diversity for the type C feruloyl esterase from Fusarium oxysporium FoFaeC was set up in a high-throughput fashion. A library of around 30,000 random mutants of FoFaeC was generated by error prone PCR of fofaec cDNA and expressed in Yarrowia lipolytica. Screening for enzymatic activity towards the substrates 5-bromo-4-chloroindol-3-yl and 4-nitrocatechol-1-yl ferulates allowed the selection of 96 enzyme variants endowed with improved enzymatic activity that were then characterized for thermo- and solvent- tolerance. The five best mutants in terms of higher activity, thermo- and solvent- tolerance were selected for analysis of substrate specificity. Variant L432I was shown to be able to hydrolyze all the tested substrates, except methyl sinapate, with higher activity than wild type FoFaeC towards methyl p-coumarate, methyl ferulate and methyl caffeate. Moreover, the E455D variant was found to maintain completely its hydrolytic activity after two hour incubation at 55 °C, whereas the L284Q/V405I variant showed both higher thermo- and solvent- tolerance than wild type FoFaeC. Small molecule docking simulations were applied to the five novel selected variants in order to examine the binding pattern of substrates used for enzyme characterization of wild type FoFaeC and the evolved variants.

摘要

在化妆品行业中,需要开发具有竞争力和环保性的工艺,这促使人们寻找具有改进性能的新型酶,以用于该领域的工业生物转化。在本研究中,以高通量的方式建立了一种完整的方法,用于生成、表达和筛选来自尖孢镰刀菌 FoFaeC 的 C 型阿魏酸酯酶的多样性。通过易错 PCR 对 fofaec cDNA 进行突变,生成了约 30000 个 FoFaeC 的随机突变体库,并在 Yarrowia lipolytica 中进行表达。筛选对底物 5-溴-4-氯吲哚-3-基和 4-硝基儿茶酚-1-基阿魏酸酯具有酶活性,筛选出了 96 种具有改进酶活性的酶变体,然后对其热稳定性和溶剂耐受性进行了表征。根据更高的活性、热稳定性和溶剂耐受性,从 5 种最佳突变体中选择了 5 种用于分析底物特异性。变体 L432I 被证明能够水解所有测试的底物,除了甲基芥子酸,对甲基 p-香豆酸、甲基阿魏酸和甲基咖啡酸的活性比对野生型 FoFaeC 更高。此外,E455D 变体在 55°C 孵育两小时后完全保持其水解活性,而 L284Q/V405I 变体比野生型 FoFaeC 表现出更高的热稳定性和溶剂耐受性。将小分子对接模拟应用于这 5 种新选择的变体,以检查用于野生型 FoFaeC 和进化变体的酶特性的底物的结合模式。

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